Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0405
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 261 LIKQCVXICH*NKNRXRKVXKC 326
           L +QCV     N +R R+V KC
Sbjct: 544 LCQQCVGNLASNNDRIRQVTKC 565


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 261 LIKQCVXICH*NKNRXRKVXKC 326
           L +QCV     N +R R+V KC
Sbjct: 544 LCQQCVGNLASNNDRIRQVTKC 565


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 261 LIKQCVXICH*NKNRXRKVXKC 326
           L +QCV     N +R R+V KC
Sbjct: 544 LCQQCVGNLASNNDRIRQVTKC 565


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 50  HLFLSITALRPRNML 6
           HL+ ++TALR R++L
Sbjct: 463 HLYTNLTALRKRDVL 477


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 330 INILXLSGIYSYFSDKX*HIV*LRTL 253
           I ++ +S   S FSDK  H+  LRT+
Sbjct: 123 IPVIGISSRDSAFSDKNIHVSFLRTV 148


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 660 CLWXPSKLLNTRWXVS 613
           C W     L TRW +S
Sbjct: 155 CKWSRKGFLRTRWSIS 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,192
Number of Sequences: 438
Number of extensions: 2147
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)