Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0403
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.9  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   7.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.8  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 417 SVIDRVTHPRRPSGRVLRD 361
           S++   T P RPSG VL+D
Sbjct: 277 SLVASRTWPFRPSGTVLKD 295


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 340 SNAKMRLRNFVXQ*YQLKYRW 278
           + A   LR+F    +Q+KY+W
Sbjct: 18  AKAHYSLRDFKANIFQVKYQW 38


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 398 RIHAGRAEESYATKHCLISIQCK 330
           R+  GR+ E Y    CL   Q K
Sbjct: 107 RVRCGRSLEGYPFNPCLTEAQYK 129


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 398 RIHAGRAEESYATKHCLISIQCK 330
           R+  GR+ E Y    CL   Q K
Sbjct: 123 RVRCGRSLEGYPFNPCLTEAQYK 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,529
Number of Sequences: 438
Number of extensions: 2342
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)