Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0403
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12290.1 68417.m01947 copper amine oxidase, putative similar ...    30   1.2  
At4g12280.1 68417.m01946 copper amine oxidase family protein con...    30   1.5  

>At4g12290.1 68417.m01947 copper amine oxidase, putative similar to
           copper amine oxidase [Cicer arietinum]
           gi|3819099|emb|CAA08855
          Length = 566

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 182 RKRTKPNG*PRR-YVQRIRNILENR*AAQIKSQLHNKPFTHVIRT 51
           R+ T+P   PR+ Y++ +RNI +     QIK  L++    HVI +
Sbjct: 379 RQETEPGESPRKSYLKAVRNIAKTEKDGQIKLSLYDPSEFHVINS 423


>At4g12280.1 68417.m01946 copper amine oxidase family protein
           contains Pfam domain, PF01179: Copper amine oxidase,
           enzyme domain
          Length = 300

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 182 RKRTKPNG*PRR-YVQRIRNILENR*AAQIKSQLHNKPFTHVI 57
           R+ T P   PR+ Y++ +RNI++     QIK  L++    HVI
Sbjct: 113 RQETAPGESPRKSYMKAVRNIVKTEKDGQIKLSLYDPSEYHVI 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,785,266
Number of Sequences: 28952
Number of extensions: 176031
Number of successful extensions: 375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)