Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0400
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    29   0.57 
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    29   0.75 
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    27   2.3  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   4.0  
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.2  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.2  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    25   9.2  
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    25   9.2  

>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 478 SLPLLYLSVNFTSDCCFIFTFYIWNTEASGGLLSAELFSSGYIDGRFKNP 329
           S+ LL+ +++F ++C +  T Y  +  A   LLS    ++  I    K P
Sbjct: 99  SIFLLFFAISFQAECYYSLTAYATSAFAGHSLLSTIAVANNIISAAIKPP 148


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 119 FQAKQLFYALPIPSVILITTFRVFRSVYLVQKIKQYVP 6
           FQ   L  AL +P+ I  T    F+  YL+  + +Y P
Sbjct: 75  FQLNALSSALSLPTHIRSTAILFFKRFYLINSVMEYSP 112


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 161 VRKLQLENRLTK*MKSLCIYIAFLTSQLIASLNDVIQNYKKQKQTNILTTFLSKTFRVLK 340
           +++ Q    L K   S C  +   T+ LI  L D++QNY    Q N+L   L  + + L+
Sbjct: 110 IKQHQQLKELAKLTASQCTRLDSSTA-LIKQLLDLVQNYPTFNQLNVLHDRLESSLKRLR 168


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 96  RSPYPXCDLNHDFSRLSERL 37
           R PYP    N DFS +SE L
Sbjct: 655 RDPYPYWHRNSDFSHISEAL 674


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 237 DVKNAMYIQRDFIHFVKRFSSWSFRTIVSLLIKQA*SYLF 118
           D+ +A + +   +HF + + S S    V LLI +  SY F
Sbjct: 94  DLSHAFHEKYPDVHFARVYLSSSLELSVRLLISRIPSYYF 133


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 330 GFLKRPSMYPEENNSADRSPPEASVFQM*NVNIKQQSLVKFTDRYKSGNEPPSAFA 497
           GF +  +M   + +S   SP + ++ QM  VN+   +    + +  SG  PPSA A
Sbjct: 337 GFQRVLAMLGRQASSTTGSP-KVALSQMPQVNVNPSNQDLASVKQPSGFSPPSAVA 391


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 212 CIYIAFLTSQLIASLNDVIQNYKK--QKQTNILTTFLSKTF 328
           CI++A      +  L D++ N  K  QK +N+L    +K +
Sbjct: 93  CIFLATKVEDSVRKLRDIVINCAKVAQKNSNVLVDEQTKEY 133


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = +3

Query: 339 KRPSMYPEENNSADRSPPEASVFQM*NVN----------IKQQSLVKFTDRYKSGNEPPS 488
           K  +MY ++N   DRS P ++   + N N           ++ S VK TD   SG E   
Sbjct: 156 KEDAMYSKDNGFEDRSKPASAWEAIRNRNRNTGNNSFPFYEEDSSVKSTDSAFSGQENSE 215

Query: 489 AF 494
           AF
Sbjct: 216 AF 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,260
Number of Sequences: 5004
Number of extensions: 43172
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)