Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0400
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    28   5.4  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    28   5.4  
12_01_0192 + 1432888-1433112,1433436-1433582,1433855-1433950,143...    28   7.2  
10_06_0184 - 11577331-11577360,11577616-11577722,11578048-115781...    27   9.5  
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834...    27   9.5  

>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
            16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 405  IQKPPVGFYLRSYFPRDTLTGALRTRKVLLRNVVK 301
            I KP +  YL  +    T+ G L+TR  +++ VVK
Sbjct: 1458 IYKPNISTYLLCHVAMPTILGRLKTRGTIVKLVVK 1492


>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
            16570316-16571924,16572363-16573781
          Length = 1640

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 405  IQKPPVGFYLRSYFPRDTLTGALRTRKVLLRNVVK 301
            I KP +  YL  +    T+ G L+TR  +++ VVK
Sbjct: 1043 IYKPNISTYLLCHVAMPTILGRLKTRGTIVKLVVK 1077


>12_01_0192 +
           1432888-1433112,1433436-1433582,1433855-1433950,
           1435150-1435182
          Length = 166

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 176 LENRLTK*MKSLCIYIAFLTSQLIASLNDVIQNYKKQKQTNIL 304
           L+  + + +++ C+Y+  LT +L+ +  DV Q   K    NI+
Sbjct: 121 LKTTIREDVRTACVYVESLTKELVFTTKDVTQLLVKGITANII 163


>10_06_0184 -
           11577331-11577360,11577616-11577722,11578048-11578126,
           11578213-11578299,11580935-11581207,11581298-11581447,
           11582186-11582785
          Length = 441

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 420 RFTSGIQKPPVGFYLRSYFPRDTLTGALRTRKVLLRNVVKI 298
           R  + + +P V   LRS+  + T+T A   + V   N+ KI
Sbjct: 169 RTIARVAQPRVAAALRSWAAKGTITAATEMKNVTFENICKI 209


>02_04_0546 -
           23782400-23782599,23782744-23782830,23782923-23783442,
           23783801-23784000,23784457-23784561,23784923-23785020,
           23785168-23785271
          Length = 437

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 137 KLDLTYFQAKQLFYALPIPSVILITTFRVFRSVYLVQK 24
           KLD + F+ +   +AL IP  +     R+ RS YL+ K
Sbjct: 3   KLDESKFEQRLQLWALRIPRELASAVTRLLRSGYLLDK 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,571,306
Number of Sequences: 37544
Number of extensions: 238170
Number of successful extensions: 475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)