Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0400
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23453-9|AAC46755.1|  727|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z93373-3|CAD54120.1|  449|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z83245-12|CAD54180.1|  449|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z83245-11|CAB05840.2|  337|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z69634-10|CAA93457.2|  431|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z68507-8|CAA92831.2|  431|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U23453-9|AAC46755.1|  727|Caenorhabditis elegans Hypothetical
           protein B0252.1 protein.
          Length = 727

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 493 KAEGGSLPLLYLSVNFTSDCCFIFTFYIWNTEASGGLLSAELFSSG 356
           K    SL L YL V + +  CFI  F + +   S G+L  E+FS G
Sbjct: 607 KFAANSLALRYLPVRWLAPECFIGKFSVKSDSWSFGVLMYEMFSLG 652


>Z93373-3|CAD54120.1|  449|Caenorhabditis elegans Hypothetical
           protein ZK131.11b protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 363 ENNSADRSPPEASVFQM*NVNIKQQSLVKFTDRYKSGNEP 482
           EN + D S P++  F+M   +  +QS V  T   KSG++P
Sbjct: 352 ENATMDISYPDSG-FEMDRASTPEQSSVSMTSTSKSGDDP 390


>Z83245-12|CAD54180.1|  449|Caenorhabditis elegans Hypothetical
           protein ZK131.11b protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 363 ENNSADRSPPEASVFQM*NVNIKQQSLVKFTDRYKSGNEP 482
           EN + D S P++  F+M   +  +QS V  T   KSG++P
Sbjct: 352 ENATMDISYPDSG-FEMDRASTPEQSSVSMTSTSKSGDDP 390


>Z83245-11|CAB05840.2|  337|Caenorhabditis elegans Hypothetical
           protein ZK131.11a protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 363 ENNSADRSPPEASVFQM*NVNIKQQSLVKFTDRYKSGNEP 482
           EN + D S P++  F+M   +  +QS V  T   KSG++P
Sbjct: 240 ENATMDISYPDSG-FEMDRASTPEQSSVSMTSTSKSGDDP 278


>Z69634-10|CAA93457.2|  431|Caenorhabditis elegans Hypothetical
           protein M18.8 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 421 TFYIWNTEASGGLLSAELFSSGYI 350
           TF +WN    G L +A  F  GY+
Sbjct: 67  TFLLWNYLTIGNLFNASFFGPGYV 90


>Z68507-8|CAA92831.2|  431|Caenorhabditis elegans Hypothetical
           protein M18.8 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 421 TFYIWNTEASGGLLSAELFSSGYI 350
           TF +WN    G L +A  F  GY+
Sbjct: 67  TFLLWNYLTIGNLFNASFFGPGYV 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,491,890
Number of Sequences: 27780
Number of extensions: 234680
Number of successful extensions: 543
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)