Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0400
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   4.4  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   4.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.6  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 266 IQNYKKQKQTNILTTFLSKTFRVLKAPVN 352
           I + K QK  N    F    FR+L APVN
Sbjct: 375 IVSNKYQKIANGDLNFNEVNFRILNAPVN 403


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 487 EGGSLPLLYLSVNFTSDCCFIFT 419
           E   LP L L  N+T+DC  +++
Sbjct: 205 ENIELPQLQLVKNYTADCTQVYS 227


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 348 SMYPEENNSADRSPPEASVFQM*NVNIKQQSLVKFTDRYKSGNE 479
           S+Y +EN    +   E SV    N+ I+   LVK   +YK+  E
Sbjct: 89  SIYLDEN-VIKKLVAECSVISDANIYIRFNKLVKCFGKYKTMKE 131


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 348 SMYPEENNSADRSPPEASVFQM*NVNIKQQSLVKFTDRYKSGNE 479
           S+Y +EN    +   E SV    N+ I+   LVK   +YK+  E
Sbjct: 89  SIYLDEN-VIKKLVAECSVISDANIYIRFNKLVKCFGKYKTMKE 131


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 475 LPLLYLSVNFTSDC 434
           LP L +S N+T+DC
Sbjct: 178 LPQLDISNNYTTDC 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,321
Number of Sequences: 438
Number of extensions: 3091
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)