Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0398
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   127   9e-31
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   127   9e-31
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   127   9e-31
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    41   1e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    30   0.20 
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    29   0.60 
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    28   0.80 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   4.2  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    25   7.4  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   9.8  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   9.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   9.8  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.8  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  127 bits (307), Expect = 9e-31
 Identities = 57/84 (67%), Positives = 70/84 (83%)
 Frame = +1

Query: 7   EKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 186
           + A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+  ++GH+ D  +TRVKLP
Sbjct: 91  KNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLP 150

Query: 187 SGAKKVLPSSNRGMVGIVAGGGRL 258
           SGAKKV+PSS RG+VGIVAGGGR+
Sbjct: 151 SGAKKVVPSSARGVVGIVAGGGRI 174



 Score =  122 bits (293), Expect = 5e-29
 Identities = 50/66 (75%), Positives = 60/66 (90%)
 Frame = +3

Query: 255 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRK 434
           IDKP+LKAGRA+HKY+VKRNCWP  RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+K
Sbjct: 174 IDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQK 233

Query: 435 VGLIAA 452
           VGLIAA
Sbjct: 234 VGLIAA 239


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  127 bits (307), Expect = 9e-31
 Identities = 57/84 (67%), Positives = 70/84 (83%)
 Frame = +1

Query: 7   EKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 186
           + A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+  ++GH+ D  +TRVKLP
Sbjct: 91  KNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLP 150

Query: 187 SGAKKVLPSSNRGMVGIVAGGGRL 258
           SGAKKV+PSS RG+VGIVAGGGR+
Sbjct: 151 SGAKKVVPSSARGVVGIVAGGGRI 174



 Score =  122 bits (293), Expect = 5e-29
 Identities = 50/66 (75%), Positives = 60/66 (90%)
 Frame = +3

Query: 255 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRK 434
           IDKP+LKAGRA+HKY+VKRNCWP  RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+K
Sbjct: 174 IDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQK 233

Query: 435 VGLIAA 452
           VGLIAA
Sbjct: 234 VGLIAA 239


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  127 bits (307), Expect = 9e-31
 Identities = 57/84 (67%), Positives = 70/84 (83%)
 Frame = +1

Query: 7   EKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 186
           + A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+  ++GH+ D  +TRVKLP
Sbjct: 91  KNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLP 150

Query: 187 SGAKKVLPSSNRGMVGIVAGGGRL 258
           SGAKKV+PSS RG+VGIVAGGGR+
Sbjct: 151 SGAKKVVPSSARGVVGIVAGGGRI 174



 Score =  122 bits (293), Expect = 5e-29
 Identities = 50/66 (75%), Positives = 60/66 (90%)
 Frame = +3

Query: 255 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRK 434
           IDKP+LKAGRA+HKY+VKRNCWP  RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+K
Sbjct: 174 IDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQK 233

Query: 435 VGLIAA 452
           VGLIAA
Sbjct: 234 VGLIAA 239


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +3

Query: 321 PYVRGVAMNPVEHPHGGGNHQHIG 392
           P VRG AMNP +HPHGGG  + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -3

Query: 245 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 75
           PAT+P          F  P   F   +L SGL    V+ +P+   +   +P   SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 375 YHHREDALQGSWQHHVHMASSYV*PCTCGMPFQLSK*VCQSSTSSNNTDHAS 220
           YH   +   G W ++  + SS +  C CG   QL   +  +  SS N DH++
Sbjct: 180 YHATSNEFPGLWCNNECIPSS-IPNCACGAKRQLEFQILPTLISSMNIDHSA 230


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 255 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 347
           ++KPI        K+K K +CW  +RG   N
Sbjct: 68  VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 257 NRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASG 153
           N+P P + P     +   T  +PD + T V LA G
Sbjct: 391 NQPSPLSSPLTNSNVSPSTICSPDNNVTFVNLAPG 425


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 200 RFCHQATEAWSVLLLEVDD*QTYFESWKGIPQVQ 301
           RF     E  S + L+++    YF  W+  P+V+
Sbjct: 150 RFIPSLNETLSFVSLDIEQHLQYFHEWQNKPRVE 183


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 104 PLSPIFSSRLHTMVPSGIAPTGITFP 27
           P++P+F SR H   P G+  T   FP
Sbjct: 11  PINPVFPSRAHPSPPLGL--TSNLFP 34


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 197 LAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPI 90
           +AP  + T+ ++A+GLC   +      RA  PL PI
Sbjct: 116 IAPLSANTMAKMANGLCDNLLTSL--IRAWAPLKPI 149


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 482 LASTNPSGPASSNKTNFATSRCSSLDSGSLTYMLMVTTTV 363
           L  ++  G ASS+  + A    SS  +GSL Y    TTTV
Sbjct: 432 LRRSSIDGSASSSSASLAVPTVSSSTTGSLHY--KTTTTV 469


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = -2

Query: 255 SSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFKI 76
           SS+SS+++  +S +   +   S R   S T S R  S+ S          T+I+H+    
Sbjct: 148 SSSSSSSSSSSSKSSSSSSKSSSR-SSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNITN 206

Query: 75  AHNGTLRHSSN 43
           A NGT  + +N
Sbjct: 207 ATNGTYCNGTN 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,114
Number of Sequences: 5004
Number of extensions: 48759
Number of successful extensions: 151
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)