Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0398
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 124 6e-29
07_01_1201 - 11419851-11419913,11420090-11420311 32 0.35
03_03_0091 - 14371528-14372661 30 1.4
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 1.9
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 3.3
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 3.3
07_03_1026 - 23369298-23370326 28 4.3
11_06_0377 - 22900042-22900452,22900527-22902236 27 7.5
09_04_0011 + 13703564-13703766,13704685-13705526,13705628-137057... 27 7.5
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 124 bits (298), Expect = 6e-29
Identities = 53/65 (81%), Positives = 58/65 (89%)
Frame = +3
Query: 258 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 437
+KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KV
Sbjct: 176 EKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKV 235
Query: 438 GLIAA 452
GLIAA
Sbjct: 236 GLIAA 240
Score = 118 bits (284), Expect = 3e-27
Identities = 51/82 (62%), Positives = 67/82 (81%)
Frame = +1
Query: 10 KATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPS 189
+ATL +GNV+P+ ++PEG +VCN+E +GDRG ARASG++A VI HNPD +R+KLPS
Sbjct: 93 RATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPS 152
Query: 190 GAKKVLPSSNRGMVGIVAGGGR 255
GAKK++PSS R M+G VAGGGR
Sbjct: 153 GAKKIVPSSCRAMIGQVAGGGR 174
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -3
Query: 251 PPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 75
PPP +P +P R+ P G +G P A R+P +P+F SR+
Sbjct: 15 PPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPSRV 72
>03_03_0091 - 14371528-14372661
Length = 377
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -3
Query: 248 PPATIPTMPLLLDGRTFLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 75
PPA P D P G+ T G+ P + A A A L+P+F +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313
Query: 74 HTMVPSGIAPTGITFP 27
M+ +G+AP + P
Sbjct: 314 RAMLTAGMAPPSLEPP 329
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 1.9
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 120 LWKLRHCDWT 149
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 151 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 62
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 333 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 440
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
>07_03_1026 - 23369298-23370326
Length = 342
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 110 RRPLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFSC 3
RRP S P + PTG T P +R A SC
Sbjct: 54 RRPEGEESSGAASQPAPERVNPTGTTTPAARAAASC 89
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 13 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 180
A L+ G P+G + E VC L + D R+ A +G + G PD + RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427
>09_04_0011 +
13703564-13703766,13704685-13705526,13705628-13705704,
13706294-13706339,13706479-13706722,13710078-13710150,
13711119-13711235
Length = 533
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 181 LPSGAKKVLPSSNRGMVGIVAGGGRLTNLF*KLEGHTTSTRSNVT 315
LPS A RG G+V GGG + + +L+G T ST +++
Sbjct: 69 LPSSAAVATSGGGRGGGGVVVGGGG-GDPWRRLDGSTASTELSLS 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167,815
Number of Sequences: 37544
Number of extensions: 370623
Number of successful extensions: 1285
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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