Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0398
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             136   1e-32
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       117   7e-27
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    40   0.001
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   34   0.067
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.5  
SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)                 28   5.8  
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_8377| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  136 bits (328), Expect = 1e-32
 Identities = 61/84 (72%), Positives = 73/84 (86%)
 Frame = +1

Query: 7   EKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 186
           +KA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLP
Sbjct: 92  KKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLP 151

Query: 187 SGAKKVLPSSNRGMVGIVAGGGRL 258
           SG KKV+PSSNR +VGIVAGGGR+
Sbjct: 152 SGIKKVIPSSNRALVGIVAGGGRI 175



 Score =  132 bits (319), Expect = 2e-31
 Identities = 58/66 (87%), Positives = 60/66 (90%)
 Frame = +3

Query: 255 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRK 434
           IDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG  STV+R T AGRK
Sbjct: 175 IDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDTPAGRK 234

Query: 435 VGLIAA 452
           VGLIAA
Sbjct: 235 VGLIAA 240


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  117 bits (281), Expect = 7e-27
 Identities = 52/74 (70%), Positives = 63/74 (85%)
 Frame = +1

Query: 7   EKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 186
           +KA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLP
Sbjct: 50  KKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLP 109

Query: 187 SGAKKVLPSSNRGM 228
           SG KKV+PSSNR +
Sbjct: 110 SGIKKVIPSSNRAL 123


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 27/77 (35%), Positives = 41/77 (53%)
 Frame = +1

Query: 13  ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 192
           A L+ G+  P+  +P GT+V N+E   G   +LARA+G  A +I    +     V+LPS 
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167

Query: 193 AKKVLPSSNRGMVGIVA 243
            +K + S     VG V+
Sbjct: 168 VEKEVSSKCLASVGRVS 184


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 308 FDLVLVVCPSSFQNRFVNRP--PPATIPTMPLLLDGRTFLAPDGSFT 174
           F L   V PSS QN F +    P AT   + L+LD  TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159


>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -1

Query: 490 VSVLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 365
           V VL P + P+LR  +RP LRP   P+L    L    W  PP
Sbjct: 410 VGVLHPMLRPMLRPMLRPMLRPMLRPMLR-PMLQYKLWCQPP 450


>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 243 WRWTIDKPILKAG-RAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHI 389
           W W++ + + KA  R+YH   + R     + GV  NP   P G  N  H+
Sbjct: 530 WTWSLVQTVGKAPTRSYHSCTLYRGEMWVIGGVYPNPDPQPDGCSNDVHV 579


>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = -1

Query: 526 LIDLIII*VSF---FVSVLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP*GC 356
           +++L II +S+   F+ +   +I P     IRP  +   V L  V  + +  WLP     
Sbjct: 193 ILELAIIVISYVIIFIKLRQRKIKPQPNR-IRPRDKELGVALFIVTVVSLLTWLPDAVVL 251

Query: 355 STGFMATPRTYGQQLRLTLYLWYA 284
           +   +  P  Y   +R TL+L Y+
Sbjct: 252 NLDSVLAPAQYKHAVRSTLFLRYS 275


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 278 SFQNRFVNRPPPATIPTMPLLLDGR 204
           SFQ+   NRPPP  IPT  ++++ R
Sbjct: 728 SFQHSPYNRPPPNVIPTGNMVIEAR 752


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 109  LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 237
            +AR +G+F   T +    D  RTR   P   KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513


>SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 484 VLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 365
           +L P + P+LR  +RP LRP   P+L  +      W  PP
Sbjct: 1   MLRPMLRPMLRPMLRPMLRPMLRPMLQYKL-----WCQPP 35


>SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)
          Length = 412

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 281 SSFQNRFVNRPPPATIPTMPLLLDGRTFLA--PDGSFTLVRLASGLCPITVAKFPEARAR 108
           S FQ   +   PP  +P  PLLL  + F    P   F L    SGL P+T ++ P  +  
Sbjct: 159 SPFQGGPLRMMPPPGMP--PLLLRPQEFSPNIPPPRFGLTGPPSGLTPLTASQMPPGQT- 215

Query: 107 RPLSP 93
            P+ P
Sbjct: 216 -PMLP 219


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 251 PPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPE 120
           PPP  IP + + + GR+F+    +  +V   SG  P+T+ K  E
Sbjct: 361 PPPIDIPNLMIPIRGRSFV----NDKIVEEKSGDSPLTIKKTSE 400


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 28  GNVMPVGAMPEGTIVCNLEEKMGDRGRLAR-ASGNFATVIG 147
           G+  PV  +P G  +C   + +G R   AR   G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777


>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 484 VLPPRILPVLRAAIRPTLRPADVPLLTVEALPI 386
           ++ P  LP+    I PT  P + P++   ALPI
Sbjct: 147 IIYPTALPITSPIIYPTALPINPPIIYPTALPI 179


>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 171 KSKATVWSQEGSAIKQQRHGR-YCCWRWTIDKPILKAGRAYHKYKVK 308
           K K  +  ++G+ +K  +    +  WR+ + K I +A   +++ KVK
Sbjct: 325 KIKGWIAKRQGALVKHGKESPLFKLWRYKVGKAIARAKHVFYRTKVK 371


>SB_8377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 225 HG-RYCCWRWTIDKPILKAGR 284
           HG R C W+W ID+ I KA +
Sbjct: 44  HGWRKCTWKWNIDRMIDKASQ 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,993,572
Number of Sequences: 59808
Number of extensions: 410479
Number of successful extensions: 1156
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)