Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0398
         (553 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...   148   1e-37
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    24   2.9  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    23   5.0  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   8.8  

>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score =  148 bits (359), Expect = 1e-37
 Identities = 66/83 (79%), Positives = 76/83 (91%)
 Frame = +1

Query: 10  KATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPS 189
           +A L++GNV+P+G MPEGTIVCNLEEK GDRG+LAR SGN+A+VI HNPD KRTRVKLPS
Sbjct: 93  RAQLQIGNVIPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPS 152

Query: 190 GAKKVLPSSNRGMVGIVAGGGRL 258
           GAKKVLPS+NR MVGIVAGGGR+
Sbjct: 153 GAKKVLPSANRAMVGIVAGGGRI 175



 Score =  141 bits (342), Expect = 1e-35
 Identities = 63/66 (95%), Positives = 63/66 (95%)
 Frame = +3

Query: 255 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRK 434
           IDKPILKAGRAYHKYKVKRNCWP VRGVAMNPVEHPHGGGNHQHIGKASTVKRGT  GRK
Sbjct: 175 IDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRK 234

Query: 435 VGLIAA 452
           VGLIAA
Sbjct: 235 VGLIAA 240


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 213 KQQRHGRYCCWR 248
           +QQ+HG++CC R
Sbjct: 280 QQQQHGQHCCCR 291


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 348 GSWQHHVHMASSYV*PCTCGMPFQLSK*VCQSSTS 244
           GS  H     SSYV    CG P ++    C+   S
Sbjct: 504 GSEGHKARDCSSYVKCAACGGPHRIGHMSCEHPAS 538


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 179 SYRLEPRRFCHQATEAWSVLLLEVDD 256
           S   +P  F     + WS +LL VDD
Sbjct: 602 SSEADPCLFVKNKRDRWSFILLYVDD 627


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,717
Number of Sequences: 2352
Number of extensions: 13063
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51301854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)