Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0398
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   132   2e-31
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    36   0.019
Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone...    29   2.9  
U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone...    29   2.9  
U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone...    29   2.9  
AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear recep...    29   2.9  
AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear recep...    29   2.9  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    28   3.9  
U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z74042-7|CAA98532.1|  155|Caenorhabditis elegans Hypothetical pr...    27   9.0  
L11247-6|AAA28005.2|  367|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF220526-1|AAF43009.1|  332|Caenorhabditis elegans DNAse II homo...    27   9.0  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  132 bits (319), Expect = 2e-31
 Identities = 55/82 (67%), Positives = 71/82 (86%)
 Frame = +1

Query: 10  KATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPS 189
           KA +++GN++PVG +PEGT +CN+E K GDRG +ARASGN+ATVI HNPD K+TR++LPS
Sbjct: 93  KAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPS 152

Query: 190 GAKKVLPSSNRGMVGIVAGGGR 255
           GAKKV+ S NR M+G+VAGGGR
Sbjct: 153 GAKKVVQSVNRAMIGLVAGGGR 174



 Score =  124 bits (300), Expect = 3e-29
 Identities = 54/65 (83%), Positives = 58/65 (89%)
 Frame = +3

Query: 258 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 437
           DKP+LKAGR+YHKYK KRN WP VRGVAMNPVEHPHGGGNHQHIG  STV+R  SAG+KV
Sbjct: 176 DKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKV 235

Query: 438 GLIAA 452
           GLIAA
Sbjct: 236 GLIAA 240


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 28  GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 186
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211


>Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical
           protein F55C5.7 protein.
          Length = 848

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 186 VWSQEGSAIKQQRHGRYCCWRWTIDKPILKAGRAYHKYKVK 308
           + S + S I+++RH    C  +  D  +L+  R  H++  K
Sbjct: 109 IGSSDPSVIQERRHAIEACLNFVFDSEVLRKSRLLHEFVEK 149


>U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform b protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 237 CCWRWTIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 356
           CCW   +  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 243 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 283


>U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform c protein.
          Length = 440

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 237 CCWRWTIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 356
           CCW   +  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 283 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 323


>U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform d protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 237 CCWRWTIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 356
           CCW   +  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 289 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 329


>AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-21b protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 237 CCWRWTIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 356
           CCW   +  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 243 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 283


>AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear receptor
           NHR-21a protein.
          Length = 458

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 237 CCWRWTIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 356
           CCW   +  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 301 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 341


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 142 IGHNPDAKRTRVKLPSGAKKVL 207
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 20/90 (22%), Positives = 37/90 (41%)
 Frame = -3

Query: 467 PSGPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVV 288
           PS    SNK    T+  +++ S S +  +  T T+  L  V G   +   A       + 
Sbjct: 257 PSRGRPSNKRQTTTTTTTTITSVSKSPQISDTNTLPTLPSVTGRGIFTGAAAAATAAAIG 316

Query: 287 CPSSFQNRFVNRPPPATIPTMPLLLDGRTF 198
             +   +  +++ P  + P  P+L   +TF
Sbjct: 317 TAAINMDTLIDKEPEPSPPRTPVLETQKTF 346


>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 272 QNRFVNRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSP 93
           Q ++V R  P T+P++      RT  +P  + TL+ L+S   P T    PE +     +P
Sbjct: 16  QGKYVKRESPPTVPSLAATAVSRTRRSPIAASTLI-LSSVPPPPTSTPPPEIQMYHSENP 74


>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
           protein H05G16.1 protein.
          Length = 1111

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 288 YHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTS 422
           Y+K++   +  P++  ++  P +H   G     +GK+ T    TS
Sbjct: 414 YNKHQNTHSSMPHIAHISSQPADHSFSGTLDARVGKSVTRDPSTS 458


>Z74042-7|CAA98532.1|  155|Caenorhabditis elegans Hypothetical
           protein T11F9.8 protein.
          Length = 155

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 179 SYRLEPRRFCHQATEAWSVLLLEVDD*QTYFESWKGIPQV 298
           S R EP     QATE W  + + +D    Y E+ + +PQV
Sbjct: 58  SQRAEPGA-TFQATETWQNVTISLDAGYRYLENNQKLPQV 96


>L11247-6|AAA28005.2|  367|Caenorhabditis elegans Hypothetical
           protein F09G8.2 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 210 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHH 34
           W +L+  +      TL++    N SG+    TC +TS TH + ++   G L  +S++ H
Sbjct: 234 WNDLISRQN---KVTLAVESWLNGSGDDIHTTCTSTSQTHDVTEMRVTG-LNFASSKDH 288


>AF220526-1|AAF43009.1|  332|Caenorhabditis elegans DNAse II homolog
           F09G8.2 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 210 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHH 34
           W +L+  +      TL++    N SG+    TC +TS TH + ++   G L  +S++ H
Sbjct: 209 WNDLISRQN---KVTLAVESWLNGSGDDIHTTCTSTSQTHDVTEMRVTG-LNFASSKDH 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,757
Number of Sequences: 27780
Number of extensions: 287021
Number of successful extensions: 809
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)