Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0398
(553 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 124 4e-29
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 124 5e-29
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 120 5e-28
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 49 2e-06
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 49 2e-06
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 46 2e-05
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 29 2.7
At5g58575.1 68418.m07339 expressed protein 28 3.6
At1g80260.1 68414.m09396 tubulin family protein 28 3.6
At3g61210.1 68416.m06850 embryo-abundant protein-related similar... 28 4.8
At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote... 28 4.8
At2g22730.1 68415.m02694 transporter-related low similarity to s... 28 4.8
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 27 6.3
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 6.3
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 27 8.3
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 124 bits (299), Expect = 4e-29
Identities = 53/65 (81%), Positives = 58/65 (89%)
Frame = +3
Query: 258 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 437
+KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KV
Sbjct: 176 EKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKV 235
Query: 438 GLIAA 452
GLIAA
Sbjct: 236 GLIAA 240
Score = 116 bits (278), Expect = 1e-26
Identities = 50/83 (60%), Positives = 67/83 (80%)
Frame = +1
Query: 7 EKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 186
+KATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG++A VI HNPD +R+KLP
Sbjct: 92 KKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLP 151
Query: 187 SGAKKVLPSSNRGMVGIVAGGGR 255
SG+KK++PS R M+G VAGGGR
Sbjct: 152 SGSKKIVPSGCRAMIGQVAGGGR 174
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 124 bits (298), Expect = 5e-29
Identities = 54/65 (83%), Positives = 56/65 (86%)
Frame = +3
Query: 258 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 437
+KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R SAG KV
Sbjct: 177 EKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKV 236
Query: 438 GLIAA 452
G IAA
Sbjct: 237 GQIAA 241
Score = 122 bits (295), Expect = 1e-28
Identities = 55/90 (61%), Positives = 72/90 (80%)
Frame = +1
Query: 7 EKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 186
+KA L VGNV+P+G++PEG ++CN+E +GDRG LARASG++A VI HNP++ TRVKLP
Sbjct: 93 KKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLP 152
Query: 187 SGAKKVLPSSNRGMVGIVAGGGRLTNLF*K 276
SG+KK+LPS+ R M+G VAGGGR F K
Sbjct: 153 SGSKKILPSACRAMIGQVAGGGRTEKPFLK 182
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 120 bits (290), Expect = 5e-28
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 7 EKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 186
+KATL VGNV+P+ ++PEG +VCN+E +GDRG LARASG++A VI HNPD+ TR+KLP
Sbjct: 92 KKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLP 151
Query: 187 SGAKKVLPSSNRGMVGIVAGGGR 255
SG+KK++PS R M+G VAGGGR
Sbjct: 152 SGSKKIVPSGCRAMIGQVAGGGR 174
Score = 120 bits (288), Expect = 9e-28
Identities = 52/65 (80%), Positives = 57/65 (87%)
Frame = +3
Query: 258 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 437
+KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KV
Sbjct: 176 EKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKV 235
Query: 438 GLIAA 452
GLIAA
Sbjct: 236 GLIAA 240
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +1
Query: 25 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 204
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 205 LPSSNRGMVGIVA 243
+ + R +G V+
Sbjct: 118 INAKCRATIGTVS 130
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = +3
Query: 297 YKVKRNCW----PYVRGVAMNPVEHPHGGG 374
YK ++ W P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +1
Query: 25 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 204
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 205 LPSSNRGMVGIVA 243
+ + R +G V+
Sbjct: 118 INAKCRATIGTVS 130
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = +3
Query: 297 YKVKRNCW----PYVRGVAMNPVEHPHGGG 374
YK ++ W P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +3
Query: 294 KYKVKRNCWPYVRGVAM-NPVEHPHGG 371
K +KRN W VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437
>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB82) mRNA, partial cds GI:3941515
Length = 201
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 270 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 431
++ R K VKR W + + HG GN I + S +KRG + R
Sbjct: 1 MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54
>At5g58575.1 68418.m07339 expressed protein
Length = 181
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 4 HEKATLEVGNVMPVGA-MPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 171
H EV N M G + G +LE+ MG +GR ARA +T N +A+R+
Sbjct: 85 HPPVASEVFNCMNCGRQIVAGRFAPHLEKCMG-KGRKARAKTTRSTTAAQNRNARRS 140
>At1g80260.1 68414.m09396 tubulin family protein
Length = 951
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 171 KSKATVWSQEGSAIKQQRHGRYCCWRWTIDKPILKAGRAYHKYKVKR 311
K++ +W +GSA K ++H W +++ +L A+H+Y + R
Sbjct: 755 KARRWMWKGKGSATKIRKH------HWLLEQKLLNFVDAFHQYVMDR 795
>At3g61210.1 68416.m06850 embryo-abundant protein-related similar to
embryo-abundant protein [Picea glauca] GI:1350531
Length = 261
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -3
Query: 365 VRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNRPPPATIPTMPLLLDG 207
V+ + R G +W V DL++ S R V+ P PTM L DG
Sbjct: 125 VKRVLRKQGGIIVVW--VYNDLIITPKVDSIMKRLVDSTLPYRNPTMNLAFDG 175
>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
kinase, putative
Length = 691
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 491 CIGLASTNPSGPASSNKTNFAT 426
C GL NP+ P +N TNF T
Sbjct: 258 CTGLNGPNPNRPDPTNPTNFTT 279
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 27.9 bits (59), Expect = 4.8
Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Frame = -3
Query: 308 FDLVLVVCP--SSFQNRFVNRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITV 135
F V ++C + F+ ATIP LL G TFL FT L S I +
Sbjct: 337 FGAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIAL 396
Query: 134 AKFPEARARRPLSPIFSSRLHTMVPSGIAPTGITFPT 24
E +P+ LH + PS + P + T
Sbjct: 397 FALGELLVFATQAPVNYVCLHCVKPS-LRPLSMAIST 432
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 298 YLWYALPAFKIGL 260
Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 135 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 22
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 160 HQDCVQSQWRSFQRHVPDDLYHPFSLQDCTQW 65
H+ Q WRS + HV D+L P ++C W
Sbjct: 667 HKFFKQVMWRSSKVHVADELQLP-PQEECVSW 697
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,394,653
Number of Sequences: 28952
Number of extensions: 273703
Number of successful extensions: 879
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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