Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0397
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    25   0.47 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.47 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.47 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.7  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 276 IPVFLGFVQSSIWKLLAWVWQFWLL 202
           +P  L F+Q  +    AW+W  WLL
Sbjct: 202 VPPPLMFLQDFLSHQHAWIWLVWLL 226


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 276 IPVFLGFVQSSIWKLLAWVWQFWLL 202
           +P  L F+Q  +    AW+W  WLL
Sbjct: 435 VPPPLMFLQDFLSHQHAWIWLVWLL 459


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 276 IPVFLGFVQSSIWKLLAWVWQFWLL 202
           +P  L F+Q  +    AW+W  WLL
Sbjct: 435 VPPPLMFLQDFLSHQHAWIWLVWLL 459


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
 Frame = -3

Query: 336 TFL*ALSALVTGFTTFFCPLIPVFLGFVQSSIWKLL-------AWVWQFWLL 202
           + L A   L  G   FF   IP +L F    +  L        AW+W  WLL
Sbjct: 421 SLLIAACGLRNGDPCFFHDTIPPYLFFESPPVVFLNDFISHQHAWIWLLWLL 472


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
 Frame = -3

Query: 336 TFL*ALSALVTGFTTFFCPLIPVFLGFVQSSIWKLL-------AWVWQFWLL 202
           + L A   L  G   FF   IP +L F    +  L        AW+W  WLL
Sbjct: 421 SLLIAACGLRNGDPCFFHDTIPPYLFFESPPVVFLNDFISHQHAWIWLLWLL 472


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
 Frame = -3

Query: 336 TFL*ALSALVTGFTTFFCPLIPVFLGFVQSSIWKLL-------AWVWQFWLL 202
           + L A   L  G   FF   IP +L F    +  L        AW+W  WLL
Sbjct: 421 SLLIAACGLRNGDPCFFHDTIPPYLFFESPPVVFLNDFISHQHAWIWLLWLL 472


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
 Frame = -3

Query: 336 TFL*ALSALVTGFTTFFCPLIPVFLGFVQSSIWKLL-------AWVWQFWLL 202
           + L A   L  G   FF   IP +L F    +  L        AW+W  WLL
Sbjct: 421 SLLIAACGLRNGDPCFFHDTIPPYLFFESPPVVFLNDFISHQHAWIWLLWLL 472


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 15/55 (27%), Positives = 20/55 (36%)
 Frame = -2

Query: 526 LQSSSLCFRREREFNDVVGIHAISLRQRLPWVFRVPRRFKRLGSAEMHRVANFPY 362
           L+S SL  R     N     H +    +L W   V    + L   E+     FPY
Sbjct: 165 LKSDSLAVRLSAA-NFFGARHGLETLNQLIWFDEVVNELRILHGVEIRDYPKFPY 218


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +2

Query: 191 GCGNSSQNCQTQASSFQIEDC 253
           G G   + C T A  F   DC
Sbjct: 498 GNGRCDEECNTYACEFDGNDC 518


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,342
Number of Sequences: 336
Number of extensions: 2733
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)