Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0397
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    91   1e-19
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    89   5e-19
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.68 
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    29   0.68 
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.68 
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.90 
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    28   1.6  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.1  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    26   4.8  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   4.8  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   8.4  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 43/72 (59%), Positives = 54/72 (75%)
 Frame = +1

Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
           S MKKIED+NTLVF VH  ANK  IK AVKKLY ++  K+NTLIRP+G KKA+V+L+ D 
Sbjct: 70  SAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADA 129

Query: 685 DAWTLPTKLGIL 720
           DA  +  ++G L
Sbjct: 130 DALDVANRIGFL 141



 Score = 75.4 bits (177), Expect = 8e-15
 Identities = 37/74 (50%), Positives = 48/74 (64%)
 Frame = +2

Query: 305 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 484
           V KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62

Query: 485 KFPLTSEAQ*RRLK 526
             P+ SE+  ++++
Sbjct: 63  VNPINSESAMKKIE 76


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 42/72 (58%), Positives = 53/72 (73%)
 Frame = +1

Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
           S MKKIED+NTLVF VH  ANK  IK AV+KLY +   K+NTLIRP+G KKA+V+L+ D 
Sbjct: 70  SAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADA 129

Query: 685 DAWTLPTKLGIL 720
           DA  +  ++G L
Sbjct: 130 DALDVANRIGFL 141



 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 34/74 (45%), Positives = 46/74 (62%)
 Frame = +2

Query: 305 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 484
           V KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62

Query: 485 KFPLTSEAQ*RRLK 526
             P+ SE+  ++++
Sbjct: 63  VNPINSESAMKKIE 76


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 279 LIPVFLGFVQSSIWKLLAWVWQFWLLL 199
           + P+  GF+  S    + W W+FW+LL
Sbjct: 182 IAPIISGFISQSS---IGWQWEFWILL 205


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 279 LIPVFLGFVQSSIWKLLAWVWQFWLLL 199
           + P+  GF+  S    + W W+FW+LL
Sbjct: 182 IAPIISGFISQSS---IGWQWEFWILL 205


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 279 LIPVFLGFVQSSIWKLLAWVWQFWLLL 199
           + P+  GF+  S    + W W+FW+LL
Sbjct: 182 IAPIISGFISQSS---IGWQWEFWILL 205


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
 Frame = -3

Query: 420 LGGSNVLGLRKCTELRIFRTLFPCSPFTTFL*ALSALV-----TGFTTFFC------PLI 274
           +GG     +      R F   F C+P +     +S L      TG    FC      PL+
Sbjct: 189 IGGGCSKNIWSLVIFRFFHGFFGCTPMSACGGTISDLFNPIQRTGALLVFCAAAFVGPLV 248

Query: 273 -PVFLGFVQSSIWKLLAWVWQFWL 205
            PV  G++  S    L W W FW+
Sbjct: 249 GPVMGGYITES---KLGWRWDFWI 269


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 279 LIPVFLGFVQSSIWKLLAWVWQFWLLL 199
           + P+  GF+  S    ++W W+FW+LL
Sbjct: 179 IAPIASGFIAGSS---ISWRWEFWILL 202


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -2

Query: 469 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 296
           + A  +  R P   R P+  RF+ L S++   + + PY+ P   F     S +    + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255

Query: 295 YFFLSLNPSL 266
               S  PSL
Sbjct: 256 RRTKSATPSL 265


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 378 LRIFRTLFPCSPFTTFL*ALSAL-VTGFTTFFCPLIPVFLGFVQSSIWK 235
           L++ R   PC  F   + ++    V  FTTF    I V+   V   +WK
Sbjct: 2   LQVLRVSAPCFAFVDTIGSIGVCRVVRFTTFHNTPIEVYNKKVNDGVWK 50


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
 Frame = -3

Query: 420 LGGSNVLGLRKCTELRIFRTLFPCSPFTTFL*ALSALVT---------GFTTFFCPLI-P 271
           +GG     +     LR F+  F  +P +     LS L T         GF TF  P + P
Sbjct: 180 IGGGCAQNIWTLVILRFFQGFFGSTPLSNCGGTLSDLFTPIQRTYVLPGFCTF--PFLGP 237

Query: 270 VFLGFVQSSIWK-LLAWVWQFWL 205
           +F   +   I +  L W W FW+
Sbjct: 238 IFGPIIGDFICQSYLGWCWVFWI 260


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 556 CEQ*RPRCCYLQSSSLCFRRER 491
           CE+ +P+CC  + ++ C RR +
Sbjct: 88  CEKKKPKCCESEQNNGCGRRNQ 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,504
Number of Sequences: 5004
Number of extensions: 45100
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)