Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0397
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...   105   3e-23
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855    105   3e-23
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    31   0.94 
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805...    29   3.8  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score =  105 bits (253), Expect = 3e-23
 Identities = 51/72 (70%), Positives = 57/72 (79%)
 Frame = +1

Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
           S MKKIEDNNTLVFIV   A+K  IKAAVKK+YDI   KVNTLIRPDGKKKAYV+L  DY
Sbjct: 91  SAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDY 150

Query: 685 DAWTLPTKLGIL 720
           DA  +  K+GI+
Sbjct: 151 DALDVANKIGII 162



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 35/72 (48%), Positives = 49/72 (68%)
 Frame = +2

Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
           +ALKA + V  G   K  +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKY 85

Query: 491 PLTSEAQ*RRLK 526
           PLT+E+  ++++
Sbjct: 86  PLTTESAMKKIE 97


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score =  105 bits (253), Expect = 3e-23
 Identities = 51/72 (70%), Positives = 57/72 (79%)
 Frame = +1

Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
           S MKKIEDNNTLVFIV   A+K  IKAAVKK+YDI   KVNTLIRPDGKKKAYV+L  DY
Sbjct: 81  SAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDY 140

Query: 685 DAWTLPTKLGIL 720
           DA  +  K+GI+
Sbjct: 141 DALDVANKIGII 152



 Score = 74.5 bits (175), Expect = 8e-14
 Identities = 33/72 (45%), Positives = 49/72 (68%)
 Frame = +2

Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
           +ALK  + V  G   ++ +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+
Sbjct: 16  QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKY 75

Query: 491 PLTSEAQ*RRLK 526
           PLT+E+  ++++
Sbjct: 76  PLTTESAMKKIE 87


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 338 VKGEHGKRVRKIR-NSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 478
           +KGE  K++R+   NS   +R KT +PP H K  +K   K    D+Y+
Sbjct: 140 LKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSYS 185


>08_02_0094 +
           12277756-12278574,12280314-12280418,12280487-12280543,
           12280969-12281041,12281525-12281703,12281788-12281961,
           12282041-12282326,12282433-12282509,12282599-12282668,
           12282751-12282822,12282920-12283155,12283240-12283374,
           12283466-12283761,12284237-12284408,12284510-12284608,
           12284704-12284835,12284950-12285050,12285426-12285615,
           12285723-12285761
          Length = 1103

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 538 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRP 642
           L+  +H     H IK  +KK YD + +K   +I+P
Sbjct: 300 LILRMHRKEVVHEIKRHLKKSYDFHTSKCTLIIKP 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,205,853
Number of Sequences: 37544
Number of extensions: 283579
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)