Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0397
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   7e-24
SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)        106   2e-23
SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)                       29   3.9  
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)                       29   5.1  
SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)                 29   5.1  
SB_13169| Best HMM Match : Band_7 (HMM E-Value=1.4013e-45)             29   5.1  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 28   8.9  
SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)           28   8.9  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score =  107 bits (258), Expect = 7e-24
 Identities = 53/70 (75%), Positives = 58/70 (82%)
 Frame = +1

Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
           S MKKIEDNNTLVFIV   ANK  IKAAVKKLYDI V+KVNTL+RPDG+KKAYVRLA DY
Sbjct: 203 SAMKKIEDNNTLVFIVDVRANKPQIKAAVKKLYDIVVSKVNTLVRPDGQKKAYVRLAPDY 262

Query: 685 DAWTLPTKLG 714
           DA  +  K+G
Sbjct: 263 DALDVSNKVG 272



 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 34/72 (47%), Positives = 49/72 (68%)
 Frame = +2

Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
           KA KA++ V KG    + +K+R SV F RPKT    R+PKYPR S P+ N++D Y IIK 
Sbjct: 138 KAQKAKKAVQKGVRAAKTKKVRTSVKFHRPKTLSLRRNPKYPRTSAPRINKLDHYAIIKH 197

Query: 491 PLTSEAQ*RRLK 526
           PLT+E+  ++++
Sbjct: 198 PLTTESAMKKIE 209


>SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)
          Length = 71

 Score =  106 bits (254), Expect = 2e-23
 Identities = 52/68 (76%), Positives = 57/68 (83%)
 Frame = +1

Query: 511 MKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDA 690
           MKKIEDNNTLVFIV   ANK  IKAAVKKLYDI V+KVNTL+RPDG+KKAYVRLA DYDA
Sbjct: 1   MKKIEDNNTLVFIVDVRANKPQIKAAVKKLYDIVVSKVNTLVRPDGQKKAYVRLAPDYDA 60

Query: 691 WTLPTKLG 714
             +  K+G
Sbjct: 61  LDVSNKVG 68


>SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)
          Length = 114

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 356 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAY 475
           K+ RK +     R+PK  + PR PK P+K   ++N+   +
Sbjct: 68  KKPRKPKKPKKPRKPKKPKKPRKPKKPKKGKWRKNKQGGH 107


>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
          Length = 149

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 386 HFRRPKTFEPPRHPKYPRKSLPKRN 460
           H   P+ F PP+H   PRK  P +N
Sbjct: 66  HRALPRKFWPPKHRALPRKFWPSKN 90


>SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
          Length = 599

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 332 KVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRK----SLPKRNRMDA 472
           K+VKGE  K+ ++     H +  K       PK PRK    S P+R   DA
Sbjct: 537 KLVKGEKSKKQKRGEREDHGKTSKDNRKSTSPKEPRKTQNESKPQRESPDA 587


>SB_13169| Best HMM Match : Band_7 (HMM E-Value=1.4013e-45)
          Length = 242

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 538 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGK--KKAYVRLARDYDAWTLPT 705
           ++F + T      +    K L ++N+  +  L RP  +   K Y+ L  DYD   LP+
Sbjct: 65  IIFDIRTRPRNVPVTTGSKDLQNVNIT-LRILYRPQPQVLPKIYMNLGEDYDERVLPS 121


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 468 SMRFLLGRDFLGYLGCLGGSNVLGLRKC 385
           SMR++ G  F+G L C  G + L LR C
Sbjct: 636 SMRYINGLHFIGLLLCAVGLSCLVLRTC 663


>SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)
          Length = 154

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 421 PRRFKRLGSAEMHRVANFPYSLPMFTFYNLPLSL 320
           PRR +R+   ++ +  N P +  +F +YNL + L
Sbjct: 49  PRRCRRVSDEQVEKSPNEPKAQSLFLWYNLAIRL 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,674,448
Number of Sequences: 59808
Number of extensions: 332736
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)