Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0397
(728 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U43701-1|AAB03210.1| 156|Homo sapiens ribosomal protein L23a pr... 116 9e-26
U02032-1|AAA03341.1| 156|Homo sapiens ribosomal protein L23a pr... 116 9e-26
L13799-1|AAA35681.1| 147|Homo sapiens protein ( Homo sapiens (c... 116 9e-26
BC058041-1|AAH58041.1| 156|Homo sapiens ribosomal protein L23a ... 116 9e-26
BC014459-1|AAH14459.1| 156|Homo sapiens ribosomal protein L23a ... 116 9e-26
AF001689-1|AAC51934.1| 156|Homo sapiens ribosomal protein L23A ... 116 9e-26
U37230-1|AAB17510.1| 156|Homo sapiens ribosomal protein L23a pr... 114 4e-25
BC105600-1|AAI05601.1| 121|Homo sapiens MGC70863 protein protein. 100 6e-21
BC065556-1|AAH65556.1| 121|Homo sapiens similar to RPL23AP7 pro... 98 3e-20
AE006463-8|AAK61228.1| 156|Homo sapiens 60S ribosomal protein L... 93 9e-19
BC098172-1|AAH98172.1| 130|Homo sapiens RPL23AP13 protein protein. 85 2e-16
BC096740-1|AAH96740.1| 130|Homo sapiens RPL23AP13 protein protein. 85 2e-16
BC096706-1|AAH96706.1| 130|Homo sapiens RPL23AP13 protein protein. 85 2e-16
AC092839-2|AAX93105.1| 130|Homo sapiens unknown protein. 85 2e-16
BC060042-1|AAH60042.1| 81|Homo sapiens LOC649946 protein protein. 82 2e-15
BC017930-1|AAH17930.1| 81|Homo sapiens LOC649946 protein protein. 82 2e-15
AL844851-8|CAM25789.1| 123|Homo sapiens major histocompatibilit... 50 9e-06
AL844851-6|CAI18575.2| 442|Homo sapiens major histocompatibilit... 50 9e-06
AL669813-9|CAM24949.1| 123|Homo sapiens major histocompatibilit... 50 9e-06
AL669813-7|CAI17628.1| 442|Homo sapiens major histocompatibilit... 50 9e-06
AL645939-8|CAM25440.1| 123|Homo sapiens major histocompatibilit... 50 9e-06
AL645939-6|CAI18086.2| 442|Homo sapiens major histocompatibilit... 50 9e-06
AL022723-13|CAI20359.1| 442|Homo sapiens major histocompatibili... 50 9e-06
BX005428-8|CAM26185.1| 123|Homo sapiens major histocompatibilit... 46 1e-04
BX005428-6|CAM26183.1| 442|Homo sapiens major histocompatibilit... 46 1e-04
BC009260-1|AAH09260.2| 460|Homo sapiens HLA-F protein protein. 46 1e-04
AK125274-1|BAC86108.1| 349|Homo sapiens protein ( Homo sapiens ... 42 0.002
>U43701-1|AAB03210.1| 156|Homo sapiens ribosomal protein L23a
protein.
Length = 156
Score = 116 bits (279), Expect = 9e-26
Identities = 56/72 (77%), Positives = 61/72 (84%)
Frame = +1
Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
S MKKIEDNNTLVFIV ANKH IK AVKKLYDI+VAKVNTLIRPDG+KKAYVRLA DY
Sbjct: 85 SAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDY 144
Query: 685 DAWTLPTKLGIL 720
DA + K+GI+
Sbjct: 145 DALDVANKIGII 156
Score = 88.6 bits (210), Expect = 2e-17
Identities = 40/72 (55%), Positives = 54/72 (75%)
Frame = +2
Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
KALKA++ V+KG H + +KIR S FRRPKT R PKYPRKS P+RN++D Y IIKF
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKF 79
Query: 491 PLTSEAQ*RRLK 526
PLT+E+ ++++
Sbjct: 80 PLTTESAMKKIE 91
>U02032-1|AAA03341.1| 156|Homo sapiens ribosomal protein L23a
protein.
Length = 156
Score = 116 bits (279), Expect = 9e-26
Identities = 56/72 (77%), Positives = 61/72 (84%)
Frame = +1
Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
S MKKIEDNNTLVFIV ANKH IK AVKKLYDI+VAKVNTLIRPDG+KKAYVRLA DY
Sbjct: 85 SAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDY 144
Query: 685 DAWTLPTKLGIL 720
DA + K+GI+
Sbjct: 145 DALDVANKIGII 156
Score = 88.6 bits (210), Expect = 2e-17
Identities = 40/72 (55%), Positives = 54/72 (75%)
Frame = +2
Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
KALKA++ V+KG H + +KIR S FRRPKT R PKYPRKS P+RN++D Y IIKF
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKF 79
Query: 491 PLTSEAQ*RRLK 526
PLT+E+ ++++
Sbjct: 80 PLTTESAMKKIE 91
>L13799-1|AAA35681.1| 147|Homo sapiens protein ( Homo sapiens
(clone 01) liver expressed protein mRNA, 3'end. ).
Length = 147
Score = 116 bits (279), Expect = 9e-26
Identities = 56/72 (77%), Positives = 61/72 (84%)
Frame = +1
Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
S MKKIEDNNTLVFIV ANKH IK AVKKLYDI+VAKVNTLIRPDG+KKAYVRLA DY
Sbjct: 76 SAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDY 135
Query: 685 DAWTLPTKLGIL 720
DA + K+GI+
Sbjct: 136 DALDVANKIGII 147
Score = 88.6 bits (210), Expect = 2e-17
Identities = 40/72 (55%), Positives = 54/72 (75%)
Frame = +2
Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
KALKA++ V+KG H + +KIR S FRRPKT R PKYPRKS P+RN++D Y IIKF
Sbjct: 11 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKF 70
Query: 491 PLTSEAQ*RRLK 526
PLT+E+ ++++
Sbjct: 71 PLTTESAMKKIE 82
>BC058041-1|AAH58041.1| 156|Homo sapiens ribosomal protein L23a
protein.
Length = 156
Score = 116 bits (279), Expect = 9e-26
Identities = 56/72 (77%), Positives = 61/72 (84%)
Frame = +1
Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
S MKKIEDNNTLVFIV ANKH IK AVKKLYDI+VAKVNTLIRPDG+KKAYVRLA DY
Sbjct: 85 SAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDY 144
Query: 685 DAWTLPTKLGIL 720
DA + K+GI+
Sbjct: 145 DALDVANKIGII 156
Score = 88.6 bits (210), Expect = 2e-17
Identities = 40/72 (55%), Positives = 54/72 (75%)
Frame = +2
Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
KALKA++ V+KG H + +KIR S FRRPKT R PKYPRKS P+RN++D Y IIKF
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKF 79
Query: 491 PLTSEAQ*RRLK 526
PLT+E+ ++++
Sbjct: 80 PLTTESAMKKIE 91
>BC014459-1|AAH14459.1| 156|Homo sapiens ribosomal protein L23a
protein.
Length = 156
Score = 116 bits (279), Expect = 9e-26
Identities = 56/72 (77%), Positives = 61/72 (84%)
Frame = +1
Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
S MKKIEDNNTLVFIV ANKH IK AVKKLYDI+VAKVNTLIRPDG+KKAYVRLA DY
Sbjct: 85 SAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDY 144
Query: 685 DAWTLPTKLGIL 720
DA + K+GI+
Sbjct: 145 DALDVANKIGII 156
Score = 88.6 bits (210), Expect = 2e-17
Identities = 40/72 (55%), Positives = 54/72 (75%)
Frame = +2
Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
KALKA++ V+KG H + +KIR S FRRPKT R PKYPRKS P+RN++D Y IIKF
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKF 79
Query: 491 PLTSEAQ*RRLK 526
PLT+E+ ++++
Sbjct: 80 PLTTESAMKKIE 91
>AF001689-1|AAC51934.1| 156|Homo sapiens ribosomal protein L23A
protein.
Length = 156
Score = 116 bits (279), Expect = 9e-26
Identities = 56/72 (77%), Positives = 61/72 (84%)
Frame = +1
Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
S MKKIEDNNTLVFIV ANKH IK AVKKLYDI+VAKVNTLIRPDG+KKAYVRLA DY
Sbjct: 85 SAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDY 144
Query: 685 DAWTLPTKLGIL 720
DA + K+GI+
Sbjct: 145 DALDVANKIGII 156
Score = 88.6 bits (210), Expect = 2e-17
Identities = 40/72 (55%), Positives = 54/72 (75%)
Frame = +2
Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
KALKA++ V+KG H + +KIR S FRRPKT R PKYPRKS P+RN++D Y IIKF
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKF 79
Query: 491 PLTSEAQ*RRLK 526
PLT+E+ ++++
Sbjct: 80 PLTTESAMKKIE 91
>U37230-1|AAB17510.1| 156|Homo sapiens ribosomal protein L23a
protein.
Length = 156
Score = 114 bits (274), Expect = 4e-25
Identities = 55/72 (76%), Positives = 60/72 (83%)
Frame = +1
Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
S MKKIEDNNTLVFIV ANKH I AVKKLYDI+VAKVNTLIRPDG+KKAYVRLA DY
Sbjct: 85 SAMKKIEDNNTLVFIVDVKANKHQISQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDY 144
Query: 685 DAWTLPTKLGIL 720
DA + K+GI+
Sbjct: 145 DALDVANKIGII 156
Score = 86.6 bits (205), Expect = 8e-17
Identities = 39/72 (54%), Positives = 53/72 (73%)
Frame = +2
Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
KALKA++ V+KG H + +KIR S FRRPKT R PKYPRKS P+RN++D Y II F
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIINF 79
Query: 491 PLTSEAQ*RRLK 526
PLT+E+ ++++
Sbjct: 80 PLTTESAMKKIE 91
>BC105600-1|AAI05601.1| 121|Homo sapiens MGC70863 protein protein.
Length = 121
Score = 100 bits (239), Expect = 6e-21
Identities = 49/70 (70%), Positives = 56/70 (80%)
Frame = +1
Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
S +KKIE+NNTLVF V ANKH I+ AVKKLYD +VAKV TLI PD +KKAYVRLA DY
Sbjct: 44 SAVKKIEENNTLVFTVDVKANKHQIRQAVKKLYDSDVAKVTTLICPDKEKKAYVRLAPDY 103
Query: 685 DAWTLPTKLG 714
DA+ + TKLG
Sbjct: 104 DAFNVVTKLG 113
Score = 60.1 bits (139), Expect = 8e-09
Identities = 28/59 (47%), Positives = 42/59 (71%)
Frame = +2
Query: 380 SVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAQ*RRLKITTPWSLLFT 556
S+ FRRPKT R P+YP+KS P+RN++ Y IIKFPLT+E+ ++++ +L+FT
Sbjct: 2 SLTFRRPKTLRLRRQPRYPQKSTPRRNKLGHYAIIKFPLTTESAVKKIEENN--TLVFT 58
>BC065556-1|AAH65556.1| 121|Homo sapiens similar to RPL23AP7
protein protein.
Length = 121
Score = 97.9 bits (233), Expect = 3e-20
Identities = 48/70 (68%), Positives = 55/70 (78%)
Frame = +1
Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
S +KKIE+NNTLVF V ANKH I+ AVKKLYD +VAKV TLI PD + KAYVRLA DY
Sbjct: 44 SAVKKIEENNTLVFTVDVKANKHQIRQAVKKLYDSDVAKVTTLICPDKENKAYVRLAPDY 103
Query: 685 DAWTLPTKLG 714
DA+ + TKLG
Sbjct: 104 DAFDVVTKLG 113
Score = 59.7 bits (138), Expect = 1e-08
Identities = 28/59 (47%), Positives = 41/59 (69%)
Frame = +2
Query: 380 SVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAQ*RRLKITTPWSLLFT 556
S+ FRRPKT R P+YPRKS P+RN++ Y IIKFPL +E+ ++++ +L+FT
Sbjct: 2 SLTFRRPKTLRLRRQPRYPRKSTPRRNKLGHYAIIKFPLATESAVKKIEENN--TLVFT 58
>AE006463-8|AAK61228.1| 156|Homo sapiens 60S ribosomal protein L23A
like protein.
Length = 156
Score = 93.1 bits (221), Expect = 9e-19
Identities = 45/72 (62%), Positives = 55/72 (76%)
Frame = +1
Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
S +K+ E+NNTL+F V ANKH IK AVKKLYD +VA+V TLI PDG+KKA VRLA DY
Sbjct: 85 SAVKRTEENNTLLFTVDVKANKHQIKQAVKKLYDGDVAEVTTLIPPDGEKKACVRLAPDY 144
Query: 685 DAWTLPTKLGIL 720
DA + K+GI+
Sbjct: 145 DALDVANKIGII 156
Score = 76.6 bits (180), Expect = 9e-14
Identities = 38/82 (46%), Positives = 54/82 (65%)
Frame = +2
Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
KALKA++ +KG H +K R S+ F+RPKT R P+YP KS P+RN++ Y +IKF
Sbjct: 20 KALKAKKAALKGVHSHIKKKTRTSLTFQRPKTLRRRRRPEYPWKSTPRRNKLGHYAVIKF 79
Query: 491 PLTSEAQ*RRLKITTPWSLLFT 556
PLT+E+ +R + +LLFT
Sbjct: 80 PLTTESAVKRTEENN--TLLFT 99
>BC098172-1|AAH98172.1| 130|Homo sapiens RPL23AP13 protein protein.
Length = 130
Score = 85.0 bits (201), Expect = 2e-16
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +2
Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
KALKA++ V+KG HG + +KIR S F+RPKT R P+YPRK+ P+RN++D Y IIKF
Sbjct: 20 KALKAKKVVLKGVHGHKKKKIRMSPTFQRPKTLRLWRPPRYPRKTTPRRNKLDHYAIIKF 79
Query: 491 PLTSEAQ*RRLKITTPWSLLFT 556
PLT+E +++K +L+FT
Sbjct: 80 PLTTEFAMKKIKDNN--TLVFT 99
Score = 63.3 bits (147), Expect = 9e-10
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = +1
Query: 511 MKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLI 636
MKKI+DNNTLVF V ANKH IK AVKKL DI+ AKVNTL+
Sbjct: 87 MKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDIDGAKVNTLM 128
>BC096740-1|AAH96740.1| 130|Homo sapiens RPL23AP13 protein protein.
Length = 130
Score = 85.0 bits (201), Expect = 2e-16
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +2
Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
KALKA++ V+KG HG + +KIR S F+RPKT R P+YPRK+ P+RN++D Y IIKF
Sbjct: 20 KALKAKKVVLKGVHGHKKKKIRMSPTFQRPKTLRLWRPPRYPRKTTPRRNKLDHYAIIKF 79
Query: 491 PLTSEAQ*RRLKITTPWSLLFT 556
PLT+E +++K +L+FT
Sbjct: 80 PLTTEFAMKKIKDNN--TLVFT 99
Score = 63.3 bits (147), Expect = 9e-10
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = +1
Query: 511 MKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLI 636
MKKI+DNNTLVF V ANKH IK AVKKL DI+ AKVNTL+
Sbjct: 87 MKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDIDGAKVNTLM 128
>BC096706-1|AAH96706.1| 130|Homo sapiens RPL23AP13 protein protein.
Length = 130
Score = 85.0 bits (201), Expect = 2e-16
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +2
Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
KALKA++ V+KG HG + +KIR S F+RPKT R P+YPRK+ P+RN++D Y IIKF
Sbjct: 20 KALKAKKVVLKGVHGHKKKKIRMSPTFQRPKTLRLWRPPRYPRKTTPRRNKLDHYAIIKF 79
Query: 491 PLTSEAQ*RRLKITTPWSLLFT 556
PLT+E +++K +L+FT
Sbjct: 80 PLTTEFAMKKIKDNN--TLVFT 99
Score = 63.3 bits (147), Expect = 9e-10
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = +1
Query: 511 MKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLI 636
MKKI+DNNTLVF V ANKH IK AVKKL DI+ AKVNTL+
Sbjct: 87 MKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDIDGAKVNTLM 128
>AC092839-2|AAX93105.1| 130|Homo sapiens unknown protein.
Length = 130
Score = 85.0 bits (201), Expect = 2e-16
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +2
Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
KALKA++ V+KG HG + +KIR S F+RPKT R P+YPRK+ P+RN++D Y IIKF
Sbjct: 20 KALKAKKVVLKGVHGHKKKKIRMSPTFQRPKTLRLWRPPRYPRKTTPRRNKLDHYAIIKF 79
Query: 491 PLTSEAQ*RRLKITTPWSLLFT 556
PLT+E +++K +L+FT
Sbjct: 80 PLTTEFAMKKIKDNN--TLVFT 99
Score = 63.3 bits (147), Expect = 9e-10
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = +1
Query: 511 MKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLI 636
MKKI+DNNTLVF V ANKH IK AVKKL DI+ AKVNTL+
Sbjct: 87 MKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDIDGAKVNTLM 128
>BC060042-1|AAH60042.1| 81|Homo sapiens LOC649946 protein protein.
Length = 81
Score = 82.2 bits (194), Expect = 2e-15
Identities = 44/72 (61%), Positives = 53/72 (73%)
Frame = +1
Query: 511 MKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDA 690
MKK EDNN LVF V+ ANKH KKLYD +VAKVNTLIRPDG+K+ +VRLA DY+A
Sbjct: 1 MKKTEDNNALVFTVNVKANKHQ-----KKLYDTDVAKVNTLIRPDGEKE-HVRLAPDYNA 54
Query: 691 WTLPTKLGIL*T 726
+ K+GI+ T
Sbjct: 55 LDVANKIGIIST 66
>BC017930-1|AAH17930.1| 81|Homo sapiens LOC649946 protein protein.
Length = 81
Score = 82.2 bits (194), Expect = 2e-15
Identities = 44/72 (61%), Positives = 53/72 (73%)
Frame = +1
Query: 511 MKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDA 690
MKK EDNN LVF V+ ANKH KKLYD +VAKVNTLIRPDG+K+ +VRLA DY+A
Sbjct: 1 MKKTEDNNALVFTVNVKANKHQ-----KKLYDTDVAKVNTLIRPDGEKE-HVRLAPDYNA 54
Query: 691 WTLPTKLGIL*T 726
+ K+GI+ T
Sbjct: 55 LDVANKIGIIST 66
>AL844851-8|CAM25789.1| 123|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 123
Score = 50.0 bits (114), Expect = 9e-06
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = -3
Query: 504 SDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSNVLGLRKCTELRIFRTLFPCSPFTTFL* 325
S V GNLM+ S FLLG F GYLGCL +VLG RK ++ I L+ + F T
Sbjct: 29 SVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFL 88
Query: 324 ALSALVTGF 298
AL +L GF
Sbjct: 89 ALQSLRFGF 97
>AL844851-6|CAI18575.2| 442|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 442
Score = 50.0 bits (114), Expect = 9e-06
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = -3
Query: 504 SDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSNVLGLRKCTELRIFRTLFPCSPFTTFL* 325
S V GNLM+ S FLLG F GYLGCL +VLG RK ++ I L+ + F T
Sbjct: 348 SVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFL 407
Query: 324 ALSALVTGF 298
AL +L GF
Sbjct: 408 ALQSLRFGF 416
>AL669813-9|CAM24949.1| 123|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 123
Score = 50.0 bits (114), Expect = 9e-06
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = -3
Query: 504 SDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSNVLGLRKCTELRIFRTLFPCSPFTTFL* 325
S V GNLM+ S FLLG F GYLGCL +VLG RK ++ I L+ + F T
Sbjct: 29 SVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFL 88
Query: 324 ALSALVTGF 298
AL +L GF
Sbjct: 89 ALQSLRFGF 97
>AL669813-7|CAI17628.1| 442|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 442
Score = 50.0 bits (114), Expect = 9e-06
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = -3
Query: 504 SDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSNVLGLRKCTELRIFRTLFPCSPFTTFL* 325
S V GNLM+ S FLLG F GYLGCL +VLG RK ++ I L+ + F T
Sbjct: 348 SVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFL 407
Query: 324 ALSALVTGF 298
AL +L GF
Sbjct: 408 ALQSLRFGF 416
>AL645939-8|CAM25440.1| 123|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 123
Score = 50.0 bits (114), Expect = 9e-06
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = -3
Query: 504 SDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSNVLGLRKCTELRIFRTLFPCSPFTTFL* 325
S V GNLM+ S FLLG F GYLGCL +VLG RK ++ I L+ + F T
Sbjct: 29 SVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFL 88
Query: 324 ALSALVTGF 298
AL +L GF
Sbjct: 89 ALQSLRFGF 97
>AL645939-6|CAI18086.2| 442|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 442
Score = 50.0 bits (114), Expect = 9e-06
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = -3
Query: 504 SDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSNVLGLRKCTELRIFRTLFPCSPFTTFL* 325
S V GNLM+ S FLLG F GYLGCL +VLG RK ++ I L+ + F T
Sbjct: 348 SVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFL 407
Query: 324 ALSALVTGF 298
AL +L GF
Sbjct: 408 ALQSLRFGF 416
>AL022723-13|CAI20359.1| 442|Homo sapiens major histocompatibility
complex, class I, F protein.
Length = 442
Score = 50.0 bits (114), Expect = 9e-06
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = -3
Query: 504 SDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSNVLGLRKCTELRIFRTLFPCSPFTTFL* 325
S V GNLM+ S FLLG F GYLGCL +VLG RK ++ I L+ + F T
Sbjct: 348 SVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFL 407
Query: 324 ALSALVTGF 298
AL +L GF
Sbjct: 408 ALQSLRFGF 416
>BX005428-8|CAM26185.1| 123|Homo sapiens major histocompatibility
complex class I F protein.
Length = 123
Score = 46.4 bits (105), Expect = 1e-04
Identities = 31/69 (44%), Positives = 38/69 (55%)
Frame = -3
Query: 504 SDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSNVLGLRKCTELRIFRTLFPCSPFTTFL* 325
S V G LM+ S FLLG F GYLGCL +VLG RK ++ I L+ + F T
Sbjct: 29 SVVSGLLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFL 88
Query: 324 ALSALVTGF 298
AL +L GF
Sbjct: 89 ALQSLRFGF 97
>BX005428-6|CAM26183.1| 442|Homo sapiens major histocompatibility
complex class I F protein.
Length = 442
Score = 46.4 bits (105), Expect = 1e-04
Identities = 31/69 (44%), Positives = 38/69 (55%)
Frame = -3
Query: 504 SDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSNVLGLRKCTELRIFRTLFPCSPFTTFL* 325
S V G LM+ S FLLG F GYLGCL +VLG RK ++ I L+ + F T
Sbjct: 348 SVVSGLLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFL 407
Query: 324 ALSALVTGF 298
AL +L GF
Sbjct: 408 ALQSLRFGF 416
>BC009260-1|AAH09260.2| 460|Homo sapiens HLA-F protein protein.
Length = 460
Score = 46.4 bits (105), Expect = 1e-04
Identities = 31/69 (44%), Positives = 38/69 (55%)
Frame = -3
Query: 504 SDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSNVLGLRKCTELRIFRTLFPCSPFTTFL* 325
S V G LM+ S FLLG F GYLGCL +VLG RK ++ I L+ + F T
Sbjct: 366 SVVSGLLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFL 425
Query: 324 ALSALVTGF 298
AL +L GF
Sbjct: 426 ALQSLRFGF 434
>AK125274-1|BAC86108.1| 349|Homo sapiens protein ( Homo sapiens
cDNA FLJ43284 fis, clone LYMPB2000083, highly similar
to HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, ALPHA CHAIN F
PRECURSOR. ).
Length = 349
Score = 41.9 bits (94), Expect = 0.002
Identities = 24/45 (53%), Positives = 27/45 (60%)
Frame = -3
Query: 504 SDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSNVLGLRKCTELRI 370
S V GNLM+ S FLLG F GYLGCL +VLG RK L +
Sbjct: 262 SVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKAQLLSV 306
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,640,150
Number of Sequences: 237096
Number of extensions: 1713963
Number of successful extensions: 4110
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4102
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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