Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0397
         (728 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p pro...   116   4e-26
AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal pr...   116   4e-26
AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA ...   116   4e-26
DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosom...   115   8e-26
BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p pro...    31   2.1  
AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA...    31   2.1  
BT021430-1|AAX33578.1|  290|Drosophila melanogaster GM06171p pro...    29   8.6  

>BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p
           protein.
          Length = 269

 Score =  116 bits (278), Expect = 4e-26
 Identities = 52/72 (72%), Positives = 62/72 (86%)
 Frame = +1

Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
           + MKKIEDNNTLVF+ H  ANK+H++AAV+KLYDI VAKVN LIRPDG+KKAYVRLARDY
Sbjct: 198 AAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRLARDY 257

Query: 685 DAWTLPTKLGIL 720
           DA  +  K+GI+
Sbjct: 258 DALDIANKIGII 269



 Score =  103 bits (247), Expect = 2e-22
 Identities = 45/71 (63%), Positives = 57/71 (80%)
 Frame = +2

Query: 314 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 493
           A K Q+K++KG  G R RKIR +VHFRRP T + PR PKYPRKS+P RNRMDAYNIIK+P
Sbjct: 134 AKKVQKKIIKGAFGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKYP 193

Query: 494 LTSEAQ*RRLK 526
           LT+EA  ++++
Sbjct: 194 LTTEAAMKKIE 204


>AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal
           protein L23a protein.
          Length = 269

 Score =  116 bits (278), Expect = 4e-26
 Identities = 52/72 (72%), Positives = 62/72 (86%)
 Frame = +1

Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
           + MKKIEDNNTLVF+ H  ANK+H++AAV+KLYDI VAKVN LIRPDG+KKAYVRLARDY
Sbjct: 198 AAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRLARDY 257

Query: 685 DAWTLPTKLGIL 720
           DA  +  K+GI+
Sbjct: 258 DALDIANKIGII 269



 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 44/71 (61%), Positives = 56/71 (78%)
 Frame = +2

Query: 314 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 493
           A K Q+K++K   G R RKIR +VHFRRP T + PR PKYPRKS+P RNRMDAYNIIK+P
Sbjct: 135 AKKVQKKIIKA-FGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKYP 193

Query: 494 LTSEAQ*RRLK 526
           LT+EA  ++++
Sbjct: 194 LTTEAAMKKIE 204


>AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA
           protein.
          Length = 277

 Score =  116 bits (278), Expect = 4e-26
 Identities = 52/72 (72%), Positives = 62/72 (86%)
 Frame = +1

Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
           + MKKIEDNNTLVF+ H  ANK+H++AAV+KLYDI VAKVN LIRPDG+KKAYVRLARDY
Sbjct: 206 AAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRLARDY 265

Query: 685 DAWTLPTKLGIL 720
           DA  +  K+GI+
Sbjct: 266 DALDIANKIGII 277



 Score =  103 bits (247), Expect = 2e-22
 Identities = 45/71 (63%), Positives = 57/71 (80%)
 Frame = +2

Query: 314 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 493
           A K Q+K++KG  G R RKIR +VHFRRP T + PR PKYPRKS+P RNRMDAYNIIK+P
Sbjct: 142 AKKVQKKIIKGAFGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKYP 201

Query: 494 LTSEAQ*RRLK 526
           LT+EA  ++++
Sbjct: 202 LTTEAAMKKIE 212


>DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosomal
           protein naturalvariant protein.
          Length = 277

 Score =  115 bits (276), Expect = 8e-26
 Identities = 52/72 (72%), Positives = 61/72 (84%)
 Frame = +1

Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
           + MKKIEDNNTLVF+ H  ANK H++AAV+KLYDI VAKVN LIRPDG+KKAYVRLARDY
Sbjct: 206 AAMKKIEDNNTLVFLTHLRANKSHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRLARDY 265

Query: 685 DAWTLPTKLGIL 720
           DA  +  K+GI+
Sbjct: 266 DALDIANKIGII 277



 Score =  103 bits (246), Expect = 3e-22
 Identities = 54/129 (41%), Positives = 78/129 (60%), Gaps = 6/129 (4%)
 Frame = +2

Query: 314 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 493
           A K Q+K++KG  G R RKIR +VHFRRP T + PR PKYPRKS+P RNRMDAYNIIK+P
Sbjct: 142 AKKVQKKIIKGAFGTRARKIRANVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKYP 201

Query: 494 LTSEAQ*RRLKITTPWSLLF------TQVQTSTISRLQSRNSMI*MLLKSTHSSGLMVRR 655
           LT+EA  ++++       L       + V+ +       + + + +L++        VR 
Sbjct: 202 LTTEAAMKKIEDNNTLVFLTHLRANKSHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRL 261

Query: 656 KRTFDSLEI 682
            R +D+L+I
Sbjct: 262 ARDYDALDI 270


>BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p
           protein.
          Length = 985

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 352 MFTFYNLPLSLKCFSNRFHYFFLSLNPSLFG 260
           M+  Y+ P  LK  +NR H+F L+L   + G
Sbjct: 368 MYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398


>AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA
           protein.
          Length = 985

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 352 MFTFYNLPLSLKCFSNRFHYFFLSLNPSLFG 260
           M+  Y+ P  LK  +NR H+F L+L   + G
Sbjct: 368 MYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398


>BT021430-1|AAX33578.1|  290|Drosophila melanogaster GM06171p
           protein.
          Length = 290

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 430 IPKEVSA*EKSHGCLQHH*IPS 495
           +P+E+ A ++ HG +QHH +P+
Sbjct: 163 VPQEIGAHQEPHGRVQHHQVPT 184


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,408,981
Number of Sequences: 53049
Number of extensions: 486955
Number of successful extensions: 1409
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)