Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0397
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    96   3e-20
U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    90   2e-18
AF003151-9|AAK18911.1|  168|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical ...    29   2.6  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 46/72 (63%), Positives = 54/72 (75%)
 Frame = +1

Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
           S+MKKIED+NTLVFIV   ANKHHIK AV  LY++   KVNTLI P  +KKAYVRLA DY
Sbjct: 75  SSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAYVRLASDY 134

Query: 685 DAWTLPTKLGIL 720
           DA  +  K+G +
Sbjct: 135 DALDVANKIGFI 146



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 32/74 (43%), Positives = 51/74 (68%)
 Frame = +2

Query: 305 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 484
           V KA++A++ VVKG      + +R SVHFRRPKT    R P+Y RKS P R+++D++ +I
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67

Query: 485 KFPLTSEAQ*RRLK 526
           K P T+E+  ++++
Sbjct: 68  KAPHTTESSMKKIE 81


>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 43/72 (59%), Positives = 53/72 (73%)
 Frame = +1

Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
           S MKKIE++NTLVFIV   ANK+ IK AV KLY++   KVNTLI P  +KKAYVRL  DY
Sbjct: 76  SAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADY 135

Query: 685 DAWTLPTKLGIL 720
           DA  +  K+G++
Sbjct: 136 DALDVANKIGVI 147



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/72 (47%), Positives = 52/72 (72%)
 Frame = +2

Query: 311 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 490
           KAL A++KVVKG+     R++R SVHFRRP T +  R  ++PRKS PK ++MD + II+ 
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70

Query: 491 PLTSEAQ*RRLK 526
           PLT+E+  ++++
Sbjct: 71  PLTTESAMKKIE 82


>AF003151-9|AAK18911.1|  168|Caenorhabditis elegans Hypothetical
           protein D1007.4 protein.
          Length = 168

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 387 ISADPRRLNLLGTLNTQGSLCLREIAWMPTTSLNSLSRLKHNE 515
           ++ DP   +LL     + S  ++ I W+P+ S+ S+ +LK+ E
Sbjct: 34  MTRDPVSQSLLIAKIEENSTSIKSIEWIPSCSVKSIRKLKNTE 76


>Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -3

Query: 351 CSPFTTFL*ALSA----LVTGFTTFFCPLIPVFLGFVQSSIWKLLAWV 220
           C P+ T+   LS     L TG  +F+C +IP    F+ S    +  W+
Sbjct: 81  CLPWFTYYYTLSGYKNDLQTGLPSFWCDMIPYMAAFLPSIFHTMAIWL 128


>AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -3

Query: 351 CSPFTTFL*ALSA----LVTGFTTFFCPLIPVFLGFVQSSIWKLLAWV 220
           C P+ T+   LS     L TG  +F+C +IP    F+ S    +  W+
Sbjct: 81  CLPWFTYYYTLSGYKNDLQTGLPSFWCDMIPYMAAFLPSIFHTMAIWL 128


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 364  YSLPMFTFYNLPLSLKCFSNRFHYFF 287
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 302 PVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 439
           P  K LK   K+ K +H K ++K+    +  + P    PP HP Y R
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,128,070
Number of Sequences: 27780
Number of extensions: 257372
Number of successful extensions: 823
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)