Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0397
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.2  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   6.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 535 TLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRP 642
           T++ I+  SA   H     K+LYD  ++  N LIRP
Sbjct: 5   TIILIL--SARICHGNPDAKRLYDDLLSNYNRLIRP 38


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 592 KKLYDINVAKVNTLIRPDG 648
           K+LYD  ++  N LIRP G
Sbjct: 22  KRLYDDLLSNYNRLIRPVG 40


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 532 NTLVFIVHTSANK-HHIKAAVKKLYDINVAKVNTLIRP 642
           NTL  I   +  K        K+LYD  ++  N LIRP
Sbjct: 14  NTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRP 51


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 648 TIRPDECVDFSNIYIIEFLDCSLDMVLVCTCVNNKDQGVVIFNLL 514
           TI   E  ++      E L C  + VL    V +K  G + +NLL
Sbjct: 50  TIEDVEATEYGEFPEDEKLKCYFNCVLEKFNVMDKKNGKIRYNLL 94


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 322 LKCFSNRFHYFFLSLNPSLFGLRAI 248
           L   S   +YF  ++NP L+ L +I
Sbjct: 309 LYILSGCLYYFSTTINPILYNLMSI 333


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 592 KKLYDINVAKVNTLIRP 642
           K+LYD  ++  N L+RP
Sbjct: 30  KRLYDDLLSNYNKLVRP 46


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 592 KKLYDINVAKVNTLIRP 642
           K+LYD  ++  N L+RP
Sbjct: 30  KRLYDDLLSNYNKLVRP 46


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 592 KKLYDINVAKVNTLIRP 642
           K+LYD  ++  N L+RP
Sbjct: 26  KRLYDDLLSNYNKLVRP 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,375
Number of Sequences: 438
Number of extensions: 3116
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)