Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0397
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va... 101 4e-22
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id... 101 4e-22
At4g39880.1 68417.m05650 ribosomal protein L23 family protein co... 33 0.15
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 29 2.4
At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00... 29 4.2
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 29 4.2
At1g10530.1 68414.m01186 expressed protein 28 7.3
At1g05950.1 68414.m00624 expressed protein 28 7.3
>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
various ribosomal L23a proteins
Length = 154
Score = 101 bits (243), Expect = 4e-22
Identities = 50/72 (69%), Positives = 55/72 (76%)
Frame = +1
Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
S MKKIEDNNTLVFIV A+K IK AVKK+YDI KVNTLIRPDG KKAYVRL DY
Sbjct: 83 SAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDY 142
Query: 685 DAWTLPTKLGIL 720
DA + K+GI+
Sbjct: 143 DALDVANKIGII 154
Score = 73.3 bits (172), Expect = 1e-13
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Frame = +2
Query: 302 PVTKALKAQRKVVKGEHGKR-VRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 478
P KALKA + V G+ K+ +KIR V F RPKT PR PKYP+ S RN++D Y
Sbjct: 14 PKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQ 73
Query: 479 IIKFPLTSEAQ*RRLK 526
I+K+PLT+E+ ++++
Sbjct: 74 ILKYPLTTESAMKKIE 89
>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
identical to GB:AF034694
Length = 154
Score = 101 bits (243), Expect = 4e-22
Identities = 50/72 (69%), Positives = 55/72 (76%)
Frame = +1
Query: 505 STMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDY 684
S MKKIEDNNTLVFIV A+K IK AVKK+YDI KVNTLIRPDG KKAYVRL DY
Sbjct: 83 SAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDY 142
Query: 685 DAWTLPTKLGIL 720
DA + K+GI+
Sbjct: 143 DALDVANKIGII 154
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Frame = +2
Query: 302 PVTKALKAQRKVVKGE-HGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 478
P KALKA + V G+ K+ +KIR V F RPKT PR KYP+ S RN++D Y
Sbjct: 14 PKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQ 73
Query: 479 IIKFPLTSEAQ*RRLK 526
I+K+PLT+E+ ++++
Sbjct: 74 ILKYPLTTESAMKKIE 89
>At4g39880.1 68417.m05650 ribosomal protein L23 family protein
contains Pfam profile PF00276: ribosomal protein L23
Length = 178
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +1
Query: 559 SANKHHIKAAVKKLYDINVAKVNTLIRPDGKKK 657
SA+K IK ++ LY +V KVNTL DGKKK
Sbjct: 38 SASKIEIKRVLESLYGFDVEKVNTL-NMDGKKK 69
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 536 PWSLLFTQVQTSTISRLQSRNSM 604
PWSL+ + Q+ I R+ +RNSM
Sbjct: 588 PWSLMDSSAQSDVIMRMMARNSM 610
>At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00646
F-box domain
Length = 389
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 653 RKRTFDSLEIMTLGRCQQNWASYK 724
R RT D +++TLG Q++W + K
Sbjct: 180 RNRTCDECQVLTLGSAQKSWRTVK 203
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 536 PWSLLFTQVQTSTISRLQSRNSM 604
PWSL+ + Q+ I R+ +RNSM
Sbjct: 581 PWSLMDSSEQSDVIMRMMARNSM 603
>At1g10530.1 68414.m01186 expressed protein
Length = 166
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 323 AQRKVVKGEHGKRVRKIRNSVHFRRPKTFEP 415
+ +KV + + GK+ R IRNS + KT+ P
Sbjct: 126 SDKKVPEKKQGKQFRVIRNSTSLLKSKTWRP 156
>At1g05950.1 68414.m00624 expressed protein
Length = 590
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 580 KAAVKKLYDINVAKVNTLI-RPDGKKKAYVRLARDY 684
KAA+K+ Y+I KV L+ P + KA RL Y
Sbjct: 291 KAALKRRYEIKAKKVAALLSHPGARGKATTRLQNRY 326
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,464,798
Number of Sequences: 28952
Number of extensions: 239785
Number of successful extensions: 672
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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