Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0396
         (555 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQ88 Cluster: Heme oxygenase; n=2; Bombycoidea|Rep: H...   113   3e-24
UniRef50_Q5TLD7 Cluster: Heme oxygenase; n=1; Apis mellifera|Rep...    52   1e-05
UniRef50_Q7Q288 Cluster: ENSANGP00000014279; n=3; Culicidae|Rep:...    46   8e-04
UniRef50_Q9VGJ9 Cluster: CG14716-PA; n=2; Sophophora|Rep: CG1471...    42   0.010
UniRef50_Q9F5B1 Cluster: Putative uncharacterized protein riorf1...    32   7.8  

>UniRef50_Q1HQ88 Cluster: Heme oxygenase; n=2; Bombycoidea|Rep: Heme
           oxygenase - Bombyx mori (Silk moth)
          Length = 245

 Score =  113 bits (272), Expect = 3e-24
 Identities = 86/169 (50%), Positives = 100/169 (59%), Gaps = 1/169 (0%)
 Frame = +3

Query: 51  MSEQDLFTTRMRKATRKIHSVSXALVNAEIC-DIR*ETIPVWGGGLFVFYHIFGISLKMX 227
           MSEQDLFTTRMRKATRKIHSVS ALVNA+    +R  T  VWGGGLFVFYHIF   L+  
Sbjct: 1   MSEQDLFTTRMRKATRKIHSVSDALVNAKFAISLRDHT--VWGGGLFVFYHIFAY-LEDA 57

Query: 228 KERLNMPRINKLFVA*NSFTERRAFEQDLANTYPW*PTWRFNXLNPLGC*RSYLAXI*QG 407
           KERLNMP  NKLFV       ++AFEQDL +       WR +    L    +YL  +   
Sbjct: 58  KERLNMPEFNKLFVH-EILYRKKAFEQDLQHYLG--DNWR-SIPKSLAL-ENYLQHL--Q 110

Query: 408 PLERRSIPKAP*MGPMFYHLYLGTP*SGGTDFKSKKREGVFW*KKKRHN 554
            LER + PK   +    YHLYLG   SGG     K+R  VF  K ++ N
Sbjct: 111 DLERDN-PKL--LMAYVYHLYLGLL-SGGQILAKKRR--VFGEKNEQPN 153


>UniRef50_Q5TLD7 Cluster: Heme oxygenase; n=1; Apis mellifera|Rep:
           Heme oxygenase - Apis mellifera (Honeybee)
          Length = 247

 Score = 51.6 bits (118), Expect = 1e-05
 Identities = 25/53 (47%), Positives = 35/53 (66%)
 Frame = +3

Query: 48  KMSEQDLFTTRMRKATRKIHSVSXALVNAEICDIR*ETIPVWGGGLFVFYHIF 206
           K + QD F  +MRKAT++IHS+S +LVNA++     +   VW  GL VFY +F
Sbjct: 2   KTNNQDTFCKKMRKATKEIHSISDSLVNAKLAFGFLDN-SVWADGLLVFYEVF 53


>UniRef50_Q7Q288 Cluster: ENSANGP00000014279; n=3; Culicidae|Rep:
           ENSANGP00000014279 - Anopheles gambiae str. PEST
          Length = 225

 Score = 45.6 bits (103), Expect = 8e-04
 Identities = 23/52 (44%), Positives = 35/52 (67%)
 Frame = +3

Query: 51  MSEQDLFTTRMRKATRKIHSVSXALVNAEICDIR*ETIPVWGGGLFVFYHIF 206
           M++   F+ +MR ATR+IH+VS ALVNA++     ++  VW  GL +FY +F
Sbjct: 1   MAQNVPFSKQMRIATREIHNVSDALVNAKLAFALYDS-RVWAEGLLIFYDVF 51


>UniRef50_Q9VGJ9 Cluster: CG14716-PA; n=2; Sophophora|Rep:
           CG14716-PA - Drosophila melanogaster (Fruit fly)
          Length = 296

 Score = 41.9 bits (94), Expect = 0.010
 Identities = 29/86 (33%), Positives = 42/86 (48%)
 Frame = +3

Query: 69  FTTRMRKATRKIHSVSXALVNAEICDIR*ETIPVWGGGLFVFYHIFGISLKMXKERLNMP 248
           FT  +RKAT+ +H+++  LVNA+I  +      VW  GL  FY ++        ERL +P
Sbjct: 27  FTKELRKATKDVHNLTDVLVNAKIA-LALSDDEVWYDGLLAFYELYKFFETHLPERL-LP 84

Query: 249 RINKLFVA*NSFTERRAFEQDLANTY 326
           +          F    AFE+D A  Y
Sbjct: 85  K---------EFHRTAAFERDFAYFY 101


>UniRef50_Q9F5B1 Cluster: Putative uncharacterized protein riorf141;
           n=3; Proteobacteria|Rep: Putative uncharacterized
           protein riorf141 - Agrobacterium rhizogenes
          Length = 752

 Score = 32.3 bits (70), Expect = 7.8
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = +1

Query: 97  GKYILSAMPWSMPKFAISVERPYQYGVEACLSSTIFLAYP*RXQKRD*ICPELISCLWHE 276
           G Y++ A    +P+   ++E P  Y V+A +S    L    +   +  +     + LW+ 
Sbjct: 104 GGYLIEAEVKELPRLLRAIEHPIGYAVQADISRVSSLG---QFDAKSRLRGRSFNELWNS 160

Query: 277 IPLQKEGHLSKIWQTP 324
            P   +G L  +W  P
Sbjct: 161 APEDDDGRLFVVWLAP 176


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,081,858
Number of Sequences: 1657284
Number of extensions: 12171858
Number of successful extensions: 22270
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22264
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36655321736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)