Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0396
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    26   4.3  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    26   4.3  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   4.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   5.7  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   5.7  
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    25   7.5  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   7.5  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    25   9.9  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    25   9.9  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    25   9.9  

>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 256 ISCLWHEIPLQKEGHLSKIWQTPILGDQPGG 348
           IS  W  I    +G L  +WQ P L   P G
Sbjct: 54  ISFSWTLIDQPPDGSLFLVWQAPTLPSPPDG 84


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 425 NSQGSLNGAYVLSFVFRDSLKRWDR 499
           N  G+L+  + L+   +DSL RW+R
Sbjct: 140 NVTGALHIGHALTIAIQDSLARWNR 164


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 46  F*DEQFNLIFNTTTN 2
           F DEQFN +FNT T+
Sbjct: 738 FNDEQFNYVFNTLTS 752


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 269 HKQLINSGHI*SLFXHLQGYAKNMVED 189
           H QLI    I  LF H +G A+ + ED
Sbjct: 448 HDQLIGYDDINQLFWHAEGIARLIFED 474


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 105 HSVSXALVNAEICDIR*ETIPVWGGGLFVFYHIFGISLKMXKERLNMPR 251
           HS+S  LV+ +IC I  E I   GG L    H   + ++   +    PR
Sbjct: 349 HSISRDLVSVDICHIFNEMIFGKGGHLHCDPHGGNVLIRSKPKNSKSPR 397


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -3

Query: 259 LLILGIFNLSFXIFKDMPKIW 197
           LLILGIFN S    K +PK W
Sbjct: 103 LLILGIFNASIP-RKSIPKDW 122


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 346 LQVGHQG*V-FARSCSNALLSVKEFHATNSLLI 251
           L V + G V F     N +  +KEFHA N++L+
Sbjct: 62  LSVSYDGYVKFWHKTPNGVEYIKEFHAHNAMLL 94


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 246 AYLISLLXSSRICQKYGRRQT 184
           AYL+SL   + +C  +G+R T
Sbjct: 99  AYLVSLFEDTNLCAIHGKRVT 119


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 246 AYLISLLXSSRICQKYGRRQT 184
           AYL+SL   + +C  +G+R T
Sbjct: 99  AYLVSLFEDTNLCAIHGKRVT 119


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 246 AYLISLLXSSRICQKYGRRQT 184
           AYL+SL   + +C  +G+R T
Sbjct: 99  AYLVSLFEDTNLCAIHGKRVT 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,037
Number of Sequences: 5004
Number of extensions: 51945
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)