Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0396
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25130| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     30   1.5  
SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)                     27   7.8  

>SB_25130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 128 QCRNLRYPLRDHTSMGWRPVCLLPYFWHI 214
           QC+N R P  +  ++ W   CL P  W +
Sbjct: 232 QCKNSRIPSYEQATIAWATCCLTPNLWRV 260


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 390 LDSFSSSPRDLGY*TSRLVTKDRCLP 313
           + SF +SP+ LGY   R VTK  CLP
Sbjct: 570 ISSFMASPQCLGYSHYRTVTKTICLP 595


>SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)
          Length = 442

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 124 WSMPKFAISVERPYQYGVEACLSSTIFLAY 213
           WS+P+  I+   P+++  E C+++   + Y
Sbjct: 133 WSIPRKGITTLEPHEWSTEDCVNANKLIVY 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,397,071
Number of Sequences: 59808
Number of extensions: 381921
Number of successful extensions: 847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)