Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0396
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     52   5e-09
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   1.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.6  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 51.6 bits (118), Expect = 5e-09
 Identities = 25/53 (47%), Positives = 35/53 (66%)
 Frame = +3

Query: 48  KMSEQDLFTTRMRKATRKIHSVSXALVNAEICDIR*ETIPVWGGGLFVFYHIF 206
           K + QD F  +MRKAT++IHS+S +LVNA++     +   VW  GL VFY +F
Sbjct: 2   KTNNQDTFCKKMRKATKEIHSISDSLVNAKLAFGFLDN-SVWADGLLVFYEVF 53


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 551 VSFFFSPKYPLPLLGLK 501
           + + ++P+YPLP  G K
Sbjct: 53  IYYIYNPRYPLPYSGSK 69


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 447 PFKEPWELISFPGVLVKXLLDSF 379
           P  +   LISFPG L+  LL  F
Sbjct: 88  PTPQSITLISFPGELLMRLLKMF 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,411
Number of Sequences: 438
Number of extensions: 3639
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)