Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0396
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09490.1 68414.m01063 cinnamyl-alcohol dehydrogenase family /...    29   2.8  
At3g01550.1 68416.m00085 triose phosphate/phosphate translocator...    28   3.6  
At3g46980.2 68416.m05102 transporter-related low similarity to b...    27   8.4  
At3g46980.1 68416.m05101 transporter-related low similarity to b...    27   8.4  
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom...    27   8.4  

>At1g09490.1 68414.m01063 cinnamyl-alcohol dehydrogenase family /
           CAD family similar to cinnamyl alcohol dehydrogenase,
           Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
           unguiculata [gi:1854445]; Location of EST gb|H37170,
           gb|H77227 and gb|AA605565
          Length = 322

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 65  SIHDTHEKSDSENTFCQXCLGQCRNL 142
           SI DT+E+S+     CQ C+ + +NL
Sbjct: 273 SIADTNEESEMNEMICQVCVEKVKNL 298


>At3g01550.1 68416.m00085 triose phosphate/phosphate translocator,
           putative similar to SWISS-PROT:P52178 triose
           phosphate/phosphate translocator [Cauliflower]{Brassica
           oleracea}
          Length = 383

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = +3

Query: 279 SFTERRAFEQDLANTYPW*PTWRFNXLNPLGC*RSYLAXI*QGPLERRSIPKAP*MGPMF 458
           S   RR+     +N+YPW P  RFN         +    +  G LE  S+ K   +G MF
Sbjct: 26  SALSRRSRAFSSSNSYPWRPNLRFNGFKLKSA--TVPENVEGGDLESGSLVKGLKLGGMF 83

Query: 459 YHLYL 473
              YL
Sbjct: 84  GVWYL 88


>At3g46980.2 68416.m05102 transporter-related low similarity to
           brain specific Na+-dependent inorganic phosphate
           cotransporter from [Rattus norvegicus] GI:507415, [Homo
           sapiens] GI:7328925, vesicular glutamate transporter 3
           from [Rattus norvegicus] GI:21685382; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 469

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = -1

Query: 339 LVTKDRCLPDLAQMPFFL*RNF------MPQTAY*FWAYLISLLXSSRICQKYGRRQTGL 178
           L   DR +  +A +P  L R +      + Q+++  W YLIS +    +  +YG +    
Sbjct: 124 LCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSF-LWGYLISPIAGGTLVDRYGGKVVMA 182

Query: 177 HPILVWSL 154
             + +WSL
Sbjct: 183 WGVALWSL 190


>At3g46980.1 68416.m05101 transporter-related low similarity to
           brain specific Na+-dependent inorganic phosphate
           cotransporter from [Rattus norvegicus] GI:507415, [Homo
           sapiens] GI:7328925, vesicular glutamate transporter 3
           from [Rattus norvegicus] GI:21685382; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 533

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = -1

Query: 339 LVTKDRCLPDLAQMPFFL*RNF------MPQTAY*FWAYLISLLXSSRICQKYGRRQTGL 178
           L   DR +  +A +P  L R +      + Q+++  W YLIS +    +  +YG +    
Sbjct: 124 LCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSF-LWGYLISPIAGGTLVDRYGGKVVMA 182

Query: 177 HPILVWSL 154
             + +WSL
Sbjct: 183 WGVALWSL 190


>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain; non-consensus TG acceptor splice site at
           exon boundary 79262
          Length = 880

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 338 WSPRIGVCQILLKCPSFCKG-ISCHKQLINSGHI 240
           W P +    IL KCP FC+G  +C   L +SG I
Sbjct: 223 WYPHLSTDDILEKCP-FCRGTCNCCTCLHSSGLI 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,085,036
Number of Sequences: 28952
Number of extensions: 278059
Number of successful extensions: 486
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)