Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0394
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    30   1.6  
U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 117 FVLWGNFEII*NLIILKVNFIYCILCIR 200
           F LW N E+I ++   KV FI C+ CIR
Sbjct: 250 FSLWTNAELILSVKEQKVGFIKCLDCIR 277


>U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical
           protein T01B11.1 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 462 KKEIYIIYIVNKFYFI*IILLIEKFNLFNFLYKNTIL 572
           K+  Y +++++      + LLI  F++FNF +K T++
Sbjct: 43  KRSNYFVFLISIIAANVLTLLIILFDIFNFSFKGTLV 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,935,638
Number of Sequences: 27780
Number of extensions: 87118
Number of successful extensions: 130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)