Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0393
         (617 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D5613D Cluster: PREDICTED: similar to CG12919-PA...    64   3e-09
UniRef50_UPI00003C017C Cluster: PREDICTED: similar to eiger CG12...    48   2e-04
UniRef50_Q50D54 Cluster: Ectodysplasin; n=4; Percomorpha|Rep: Ec...    35   1.4  
UniRef50_A7RR54 Cluster: Predicted protein; n=1; Nematostella ve...    34   2.4  
UniRef50_Q0ITH9 Cluster: Os11g0243300 protein; n=6; Oryza sativa...    34   3.1  
UniRef50_Q92838 Cluster: Ectodysplasin-A (Ectodermal dysplasia p...    34   3.1  
UniRef50_A7RR52 Cluster: Predicted protein; n=1; Nematostella ve...    33   5.5  
UniRef50_Q10149 Cluster: Uncharacterized protein C1D4.02c; n=1; ...    33   5.5  

>UniRef50_UPI0000D5613D Cluster: PREDICTED: similar to CG12919-PA,
           isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG12919-PA, isoform A - Tribolium castaneum
          Length = 409

 Score = 63.7 bits (148), Expect = 3e-09
 Identities = 27/65 (41%), Positives = 45/65 (69%)
 Frame = +3

Query: 312 DTLLQCAQSSHSTEVLDKPNSCFSASALFLRAGDRLAVRNTGGDRHSLMQPEKSFIGLIK 491
           +TLLQC   +HS+E + K N+CF+A+A +L   D++++ +    R+SL +P KSF G++K
Sbjct: 343 ETLLQCTTMTHSSERVMKGNTCFTAAASYLNENDKISLVDLSEARYSLFEPGKSFFGVVK 402

Query: 492 LADAE 506
           L D +
Sbjct: 403 LGDVK 407



 Score = 48.4 bits (110), Expect = 1e-04
 Identities = 27/86 (31%), Positives = 40/86 (46%)
 Frame = +1

Query: 1   RHEQRRPFIAAHFHGNTSHLNTEVHEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPT 180
           R  + RP  + HF G+TS      HE++ GNG +R       D W  S W       +  
Sbjct: 245 RTGRMRPLPSVHFSGDTSKYVYGQHENFNGNGHLRHPQTTYVD-WVESDWFGKLGMDQYF 303

Query: 181 LTHSGHVRVHHTGVYLVYAQIYYLEV 258
               G + V   G+Y +YAQI+Y ++
Sbjct: 304 AFSDGLLTVKEPGLYFIYAQIFYYDI 329


>UniRef50_UPI00003C017C Cluster: PREDICTED: similar to eiger
           CG12919-PB, isoform B; n=1; Apis mellifera|Rep:
           PREDICTED: similar to eiger CG12919-PB, isoform B - Apis
           mellifera
          Length = 539

 Score = 47.6 bits (108), Expect = 2e-04
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
 Frame = +1

Query: 16  RPFIAAHFHGNTSHLNTEVHEHYKGNGLIRVSHG-APHDVWYPSQWTISSPPPRP-TLTH 189
           R  IA H+ GN +  + +  + Y GNG IR  HG +    W PS W  +        +++
Sbjct: 381 RKVIAVHYDGNKNGYSEK--DIYAGNGRIR--HGNSMFKAWKPSDWVNNLGMNEYFKMSN 436

Query: 190 SGHVRVHHTGVYLVYAQIYY 249
            G V ++  G+YLVYAQI+Y
Sbjct: 437 DGSVTIYEPGLYLVYAQIHY 456



 Score = 38.7 bits (86), Expect = 0.11
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 318 LLQCA--QSSHSTEVLDKPNSCFSASALFLRAGDRLAVRNTGGDRHSLMQPEKSFIGLIK 491
           +LQC    S H+  +     +CFSA    LR  D L  +     R ++   E SF GL+K
Sbjct: 474 ILQCMIDNSGHARNI---SQTCFSAQVTLLRKEDVLVFKEASSPRFAIFDKENSFFGLVK 530

Query: 492 LAD 500
           L +
Sbjct: 531 LGE 533


>UniRef50_Q50D54 Cluster: Ectodysplasin; n=4; Percomorpha|Rep:
           Ectodysplasin - Gasterosteus aculeatus (Three-spined
           stickleback)
          Length = 367

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 363 KPNSCFSASALFLRAGDRLAVRNTGGDRHSLMQPEKSFIGLIKLADA 503
           K N+C++A    LRAG R+++R    D    M    +F+G ++L +A
Sbjct: 315 KFNTCYTAGVSLLRAGQRISIRIVYEDTLISMTNHTTFLGSVRLGEA 361


>UniRef50_A7RR54 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 344

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 187 HSGHVRVHHTGVYLVYAQIYYLEVTT*YLGYCTVR 291
           H+G + +  +G Y VY+Q+YY + +T  L + T++
Sbjct: 247 HTGEITIEKSGFYFVYSQMYYYDGSTKLLSHYTLK 281


>UniRef50_Q0ITH9 Cluster: Os11g0243300 protein; n=6; Oryza
           sativa|Rep: Os11g0243300 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 476

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 73  HEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTHSGHVRV 207
           H H+K  G + V+ G P+   Y +   +  PPP P   H  H ++
Sbjct: 283 HHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQI 327


>UniRef50_Q92838 Cluster: Ectodysplasin-A (Ectodermal dysplasia
           protein) (EDA protein) [Contains: Ectodysplasin-A,
           membrane form; Ectodysplasin-A, secreted form]; n=31;
           Euteleostomi|Rep: Ectodysplasin-A (Ectodermal dysplasia
           protein) (EDA protein) [Contains: Ectodysplasin-A,
           membrane form; Ectodysplasin-A, secreted form] - Homo
           sapiens (Human)
          Length = 391

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 321 LQCAQSSHSTEVLDKPNSCFSASALFLRAGDRLAVRNTGGDRHSLMQPEKSFIGLIKLAD 500
           LQC +S  + +     N+C++A    L+A  ++AV+    D    M    +F G I+L +
Sbjct: 330 LQCTRSIETGKT--NYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGE 387

Query: 501 A 503
           A
Sbjct: 388 A 388


>UniRef50_A7RR52 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 305

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 24/82 (29%), Positives = 36/82 (43%)
 Frame = +1

Query: 121 PHDVWYPSQWTISSPPPRPTLTHSGHVRVHHTGVYLVYAQIYYLEVTT*YLGYCTVRILS 300
           P  V + + W  S    +      G + V  +G Y VY+Q+YY +  T Y+ +  V I  
Sbjct: 165 PKSVHHITNWKTSLITGKMRFIREGVLLVGTSGYYWVYSQMYYYDSMTRYMSH-DVYINE 223

Query: 301 RMEETPFFNVHNHPTLRKFSTN 366
             +      V   P  RKF+TN
Sbjct: 224 ESKLRSISAVPKGP-FRKFNTN 244


>UniRef50_Q10149 Cluster: Uncharacterized protein C1D4.02c; n=1;
           Schizosaccharomyces pombe|Rep: Uncharacterized protein
           C1D4.02c - Schizosaccharomyces pombe (Fission yeast)
          Length = 345

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 16  RPFIAAHFHGNTSHLNTEVHEHYKGNGLIR--VSHGAPHDVWYPSQWTISSPPPRP 177
           R +I  H+  +T  +    + H+ GNG I   V HG  H +  P    +S PPP+P
Sbjct: 170 RLYIYNHYRDSTRQVTIVPNRHWGGNGAIGCGVGHGVLHRLPAP----LSGPPPQP 221


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,867,352
Number of Sequences: 1657284
Number of extensions: 12217161
Number of successful extensions: 36430
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36396
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)