Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0393
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   3.6  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.3  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   6.3  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   6.3  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 448 CLSPPVFLTASLSPALRNRADAEKQE 371
           C+SP   L  S S  +RNRA+  +++
Sbjct: 17  CVSPEGSLLPSNSREMRNRAEKMRRD 42


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 319 FFNVHNHPTLRKFSTNQIPVSLH 387
           F+N  NH   R +  N+ P+ L+
Sbjct: 401 FYNFLNHNFDRHYEENRAPLGLY 423


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 136 YPSQWTISSPPPRPTLTHSGH 198
           YPS   IS       +THSGH
Sbjct: 375 YPSVHFISRKLGEDLVTHSGH 395


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 136 YPSQWTISSPPPRPTLTHSGH 198
           YPS   IS       +THSGH
Sbjct: 375 YPSVHFISRKLGEDLVTHSGH 395


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,214
Number of Sequences: 336
Number of extensions: 2949
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)