Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0393
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    33   0.033
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    31   0.10 
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    30   0.23 
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    28   1.2  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   1.6  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    27   2.9  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    26   3.8  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   6.6  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   8.8  

>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 16  RPFIAAHFHGNTSHLNTEVHEHYKGNGLIR--VSHGAPHDVWYPSQWTISSPPPRP 177
           R +I  H+  +T  +    + H+ GNG I   V HG  H +  P    +S PPP+P
Sbjct: 170 RLYIYNHYRDSTRQVTIVPNRHWGGNGAIGCGVGHGVLHRLPAP----LSGPPPQP 221


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = -2

Query: 574 RFKWHRYNVRFSERILLQVLRRSSASANLMRPMKLF 467
           RFK +R+N +F ER+ L+   RS   +N + PMK+F
Sbjct: 585 RFKSYRFNQQFVERVPLKY--RSLTYSNKIEPMKVF 618


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 593 LFIKRTSFQMAPLQCPVFRTDITTGLAPIFG 501
           +F+K+++F++AP   P+      TG+AP  G
Sbjct: 517 MFVKKSTFRLAPPDVPIIMVGPGTGVAPFRG 547


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 184 THSGHVRVHHTGVYLVYAQIYYLEVTT*YLGYCTVRILSRMEET 315
           TH+ H R+H+    L+   I++      Y GYC    +++ EET
Sbjct: 294 THNHHRRIHNIKARLLETHIFHPNTQNHYGGYC----MNQAEET 333


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 318 LLQCAQSSHSTEVLDKPNSCFSASALFLRAGDRLAVRNTGGDRHSLMQPEKSFIGLI 488
           L +CA+    + +LDK N C     +F  A    AV N    RH      K F  L+
Sbjct: 601 LQRCAEDLEYSNMLDKANECDDDIKIFYVAA--FAVSNFSNMRHKERSVRKVFSPLL 655


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 355 FSTNQIPVSLHQLCSSELATDSPLGTPAEIDTL 453
           FS N++   L  LC+++ +  S L  PAE  TL
Sbjct: 273 FSPNEVIADLFDLCNNKHSGRSQLKNPAEAITL 305


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 40  HGNTSHLNTE--VHEHYKGNGLIRVSHGAPHDVWYPSQWTISS 162
           H NT  ++ +  +H+  +  G+ +++HG  H ++  S  +I S
Sbjct: 318 HANTKQVDDDPVIHDFLQNRGIKQLAHGDHHHLYLTSDHSIWS 360


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 129 VVGGAVRHSYQAITFVMLMNFGVQMRCVSME 37
           V+G  + + Y+ + F+   +FG  +RC+  E
Sbjct: 690 VLGDHIAYRYEVVDFLGKGSFGQVLRCIDYE 720


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 261 DVISWVLHRTNPESDGRDTLLQCAQSSHSTEVLDKPNSC 377
           D+  W LH TN +S     +L C  + H+  V D    C
Sbjct: 375 DICVWDLHDTNYQSIVSPLMLTCT-NIHNKPVSDYEKEC 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,546
Number of Sequences: 5004
Number of extensions: 50682
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)