Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0393
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0037 - 7613632-7613727,7614452-7615507 34 0.10
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 31 0.55
02_05_0815 - 31977721-31977813,31978078-31978482,31978843-31979349 29 3.9
01_06_0261 + 27978341-27978391,27978539-27978683,27978794-279788... 29 3.9
12_01_0795 - 7288235-7288300,7288367-7288443,7288789-7290760 28 5.2
12_01_0087 + 692180-693361,695920-696150 28 5.2
03_02_0613 - 9848514-9848539,9848942-9849200,9849326-9849365,984... 28 5.2
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963... 28 5.2
01_01_0144 - 1316626-1316658,1317580-1318863 28 5.2
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 27 9.0
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 73 HEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTHSGHVRV 207
H H+K G + V+ G P+ Y + + PPP P H H ++
Sbjct: 224 HHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQI 268
>06_03_0151 + 17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 31.5 bits (68), Expect = 0.55
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 267 ISWVLHRTNPESDGRDTLLQCAQS-SHSTEVLDKPNSCFSASALFLRAGDRLAVRNTGGD 443
IS VL +D + +L C + + + E+ + N+ ++ A RLA+ + G
Sbjct: 826 ISLVLENLALSTDDNEDILYCLKGWNQALEMAKQKNNQWALYAKAFLDRTRLALASKGEQ 885
Query: 444 RHSLMQPEKSFIG 482
++LMQP ++G
Sbjct: 886 YYNLMQPSAEYLG 898
>02_05_0815 - 31977721-31977813,31978078-31978482,31978843-31979349
Length = 334
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 115 GAPHDVWYPSQWTISSPPPRPTLTHSG 195
GA + W Q+ +SSPP PT SG
Sbjct: 81 GAVEEFWDERQYPVSSPPAAPTPAASG 107
>01_06_0261 +
27978341-27978391,27978539-27978683,27978794-27978861,
27979630-27980073,27980163-27980681,27981002-27981214,
27981650-27981805,27982753-27982941
Length = 594
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +1
Query: 334 NHPTLRKFSTNQIPVSLHQLCSSELATDSPLGTPAEIDTLSCS 462
N+P K+S+N++P S +++ A+D+ G+ + +DT+S S
Sbjct: 183 NYPARPKYSSNKLPSSKASR-NTKSASDTIKGSSSALDTMSTS 224
>12_01_0795 - 7288235-7288300,7288367-7288443,7288789-7290760
Length = 704
Score = 28.3 bits (60), Expect = 5.2
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -1
Query: 539 RTDITTGLAPIFGVSQFNETYEAFLWLHERVSISAGVPNGE----SVASSEEQS*CRETG 372
R ++ + I SQ N+ EA +WL R I+AGV + SV S+ Q C + G
Sbjct: 339 RRNVVSWSCMIAAYSQLNQPEEA-VWLF-REMIAAGVDPIDATLVSVLSACAQLGCLDLG 396
Query: 371 IWFVENF 351
W EN+
Sbjct: 397 RWIYENY 403
>12_01_0087 + 692180-693361,695920-696150
Length = 470
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 606 EIETALYKENFVSNGTVTMSGFPNGYYYRSCADLRR 499
E+E A+++ N V+ G P ++YR+ A + R
Sbjct: 293 EMEAAMFRNNLDVRAFVSRGGHPRTWFYRAFATMAR 328
>03_02_0613 -
9848514-9848539,9848942-9849200,9849326-9849365,
9849952-9850117,9850228-9850756
Length = 339
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Frame = +1
Query: 73 HEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPT---LTHSGHVRVHHTGVYLVY 234
H H + S G WY T PPP P H GH + +H GV Y
Sbjct: 170 HHHQPAPAIAVGSRGVSPVPWYYHPSTTPPPPPPPAAHYAAHGGHHQQYH-GVLPFY 225
>01_06_1072 +
34295227-34295316,34295410-34295583,34296268-34296322,
34296410-34296679,34296881-34297092,34297276-34297396,
34297674-34297761,34297834-34297912,34298092-34298179,
34298312-34298352,34298477-34298529,34298623-34298779,
34298862-34299053
Length = 539
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 16 RPFI-AAHFHGNTSHLNTEVHEHYKGNGLIRVSHGAPHDVW 135
R F+ AH H + S NT V+E KG G++ V+ VW
Sbjct: 452 RSFVMGAHTHHSRS--NTNVYEGRKGKGMVEVTISRGRVVW 490
>01_01_0144 - 1316626-1316658,1317580-1318863
Length = 438
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 163 PPPRPTLTHSGHVRVHHTGVYLVYAQIYYL 252
PP R TL G + H G+ ++YA YL
Sbjct: 87 PPARTTLLGIGEISGTHKGIVVIYAHRCYL 116
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 145 QWTISSPPPRPTLTHSGHVRVHHTGVYLV 231
QW + P PT SG HH+G LV
Sbjct: 45 QWNSPNAAPAPTAPRSGSGAFHHSGNTLV 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,996,446
Number of Sequences: 37544
Number of extensions: 360800
Number of successful extensions: 1073
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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