Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0393
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31825| Best HMM Match : TNF (HMM E-Value=5.3e-08) 36 0.035
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11) 34 0.080
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 32 0.43
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 29 2.3
SB_59127| Best HMM Match : ATP-synt_F6 (HMM E-Value=2.7) 29 2.3
SB_46986| Best HMM Match : HEAT (HMM E-Value=2.5e-06) 29 3.0
SB_57745| Best HMM Match : Extensin_2 (HMM E-Value=0.69) 29 4.0
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 29 4.0
SB_11826| Best HMM Match : Kazal_1 (HMM E-Value=1.2e-16) 29 4.0
SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.0
SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_20315| Best HMM Match : RVT_1 (HMM E-Value=1.4e-21) 27 9.2
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_31825| Best HMM Match : TNF (HMM E-Value=5.3e-08)
Length = 371
Score = 35.5 bits (78), Expect = 0.035
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 190 SGHVRVHHTGVYLVYAQIYYLEVTT*YLGY 279
+G + +HH GVY VYAQ++Y + + LG+
Sbjct: 152 TGSIIIHHPGVYFVYAQLFYTDDRSSLLGH 181
>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
Length = 476
Score = 34.3 bits (75), Expect = 0.080
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 187 HSGHVRVHHTGVYLVYAQIYYLEVTT*YLGYCTVR 291
H+G + + +G Y VY+Q+YY + +T L + T++
Sbjct: 190 HTGEITIEKSGFYFVYSQMYYYDGSTKLLSHYTLK 224
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 372 NLVCRELP*SGMIVHIEEGCLFHPTQDSYGAIPKISRRDFQV 247
N V +E S ++V EE F P + GA+P ++R+D +V
Sbjct: 4627 NAVGKETCRSQLVVEAEEFAPFFPEDEGQGAVPVVTRQDSEV 4668
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 441 DRHSLMQPEKSFIGLIKLADAEDRRKTCSNIRSENRTL*RCHLKRSSLYKE 593
D +L+Q +F+ +K+A E R K ++ E+RT+ ++ LY++
Sbjct: 850 DSVTLLQESDAFLESVKIASMETRWKRFLSLMEEHRTMLEASIEFYQLYEQ 900
>SB_59127| Best HMM Match : ATP-synt_F6 (HMM E-Value=2.7)
Length = 479
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 112 HGAPHDVWYPSQWTISSPPPRPTL 183
H P+ +WY + S+PPP TL
Sbjct: 147 HSQPYRIWYSLEVQASAPPPEKTL 170
>SB_46986| Best HMM Match : HEAT (HMM E-Value=2.5e-06)
Length = 486
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +1
Query: 322 FNVHNHPTLRKFSTNQIPVSLHQLCSSELATDSPLGTPAEIDT 450
+ +++HP K T +P +LH+ + T G P+++ +
Sbjct: 272 YGIYDHPEFDKLLTKHVPANLHRQIHDIVETLRTKGLPSDVSS 314
>SB_57745| Best HMM Match : Extensin_2 (HMM E-Value=0.69)
Length = 472
Score = 28.7 bits (61), Expect = 4.0
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Frame = +1
Query: 139 PSQW-TISSPPPRPTLTHSGHVRVHHTGVYLV---YAQIYYLE-VTT*YLGYCTVRILSR 303
PS + T+ PP P + + + H+ V Y +Y + V T + C + S
Sbjct: 32 PSTYITLYPVPPVPAFHCTQYPQYLHSIVPSTPNTYIPLYPVPPVPTFHCTQCPQYLHSI 91
Query: 304 MEETP--FFNVHNHPTLRKFSTNQIPVSLHQLCSSELATDSPLGTPAEIDTLSCSQ 465
+ TP + +++ P + F Q P LH + S +T PL I T C+Q
Sbjct: 92 VPSTPNTYISLYPVPQVPTFHCTQYPQYLHSIVPSTPSTYIPLYPVPPIPTFHCTQ 147
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 435 GGDRHSLMQPEKSFIGLIKLADAEDRRK 518
G +H PEKS +GL KL AE++RK
Sbjct: 27 GSSKHKFKLPEKSVLGLQKL--AEEKRK 52
>SB_11826| Best HMM Match : Kazal_1 (HMM E-Value=1.2e-16)
Length = 98
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 188 TPVTSACTTPESTSSTLRFTTWKSRRDILGIAPYES*VGWKRHPSSMC 331
TPV + T+P T +T+R ++K ++ GIA K+ S MC
Sbjct: 4 TPVLAVATSPPLTCATVRCASYKVCEEVNGIARCVCNRACKKIYSPMC 51
>SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 28.3 bits (60), Expect = 5.3
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +1
Query: 175 PTLTHSGHVRVH-HTGVYLVYAQIYYLEVTT*YLGYCTVRILSRMEETPFFNVHNHPTLR 351
PT T+ H+R+H H + +Y Y TT Y T + TP+ +H ++
Sbjct: 99 PTPTYP-HLRLHTHHSISRLYTYTYDFIPTTPYSPLHTHDSIPT-PTTPYSPLHIPDSIS 156
Query: 352 KFSTNQIPVSLHQLCSSELATDSPLGTPAEIDT 450
+T P+ +H S+ SPL I T
Sbjct: 157 THTTPYSPLHIHDSISTPTTPYSPLHIHDSIHT 189
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 188 TPVTSACTTPESTSSTLRFTT 250
TPVT C+T S +ST+ F+T
Sbjct: 1907 TPVTDMCSTTSSLASTISFST 1927
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 88 GNGLIRVSHGAPHDVWYPSQWTISSP 165
GNG +++S G P QWT+S+P
Sbjct: 3497 GNGGVQISQGNPMTYGAGIQWTLSNP 3522
>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = +1
Query: 1 RHEQRRPFIAAHFHGNTSHLNTEVHEHYKGNGLIRVSHGAPHDVWYPSQW---TISSPPP 171
RH+ I +H NT + ++ H Y N + S + + PSQ+ TI+ P
Sbjct: 201 RHQHNTIAIPPQYHHNTIAIPSQYHSQYHRNTITIPSQYHHNTIAIPSQYHHNTITIPSQ 260
Query: 172 RPTLTHSGHVRVHHTGV 222
T + + HH +
Sbjct: 261 YHRNTITIQSQYHHNTI 277
>SB_20315| Best HMM Match : RVT_1 (HMM E-Value=1.4e-21)
Length = 479
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 602 LKQLFIKRTSFQMAPLQCPVFRTDITTGLAP 510
+ +K SF++AP+ C ++ + +T G P
Sbjct: 57 ISNTILKTFSFELAPVICELYNSSLTDGFFP 87
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +1
Query: 82 YKGNGLIRVSHGAPHD-VWYPSQWTI-----SSPPP--RPTLTHSGHVRVHHTGVYLVY 234
Y+G R +HG D V Y T+ +SPP RP G VR H GV +VY
Sbjct: 385 YQGRQECRCNHGYRGDGVTYCVSTTVRPQTTTSPPTTSRPQGAQCGPVRCHERGVCIVY 443
>SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 411 DRLAVRNTGGDRHSLMQPEKSFIGLIKLADAEDRRK 518
D L + N+G L +P+K + L+K +D + +RK
Sbjct: 70 DALKMMNSGNQYPRLSKPKKGQLILVKSSDEQSKRK 105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,487,216
Number of Sequences: 59808
Number of extensions: 402454
Number of successful extensions: 1214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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