Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0393
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    30   1.5  
Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U49956-8|AAA93436.1|  765|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U49956-7|AAL32232.1|  753|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U49956-6|ABD94087.1|  762|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U49956-5|ABD94086.1|  762|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    28   6.1  
AL132853-2|CAB60441.2|  424|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine re...    28   6.1  
AC024818-4|AAF60782.5|  457|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z77657-9|CAB01149.2|  381|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U23484-15|AAC46762.1|  299|Caenorhabditis elegans Hypothetical p...    27   8.1  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      27   8.1  
AF025457-8|AAB70968.2|  383|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    27   8.1  

>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
            F42C5.10 protein.
          Length = 1292

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +1

Query: 25   IAAHFHGNTSHLNTEVHEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTHSGHVR 204
            I  H HG+  H+    HE ++G       HG  + +   +Q    S     T+ HS  V+
Sbjct: 1191 IELHEHGSKDHMTRHHHEMHQGTVDEHSEHG--YSIGGGAQRIDVSARTSSTVMHSPPVQ 1248

Query: 205  VHHTGVY 225
            V H   Y
Sbjct: 1249 VQHNSYY 1255


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +2

Query: 188 TPVTSACTTPEST--SSTLRFTTW 253
           TP+TS+ TT EST  SST + TTW
Sbjct: 550 TPLTSSSTTTESTTVSSTTQSTTW 573


>Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical
           protein K04D7.3 protein.
          Length = 483

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 100 IRVSHGAPHDVWYPSQWTISSPPPRPTLT 186
           ++   GA  D+W    W +SSPP   T +
Sbjct: 312 VQTGGGATGDIWAHDHWNLSSPPDMVTFS 340


>Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical
           protein C44H4.4 protein.
          Length = 745

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 396 TELMQRNRNLVCRELP*SGMIVHIEEGCLFHPTQD 292
           T L +  R+L    LP    IVH+E G  +HP  D
Sbjct: 443 TNLFESERHL--HSLPSDQQIVHVEFGAFYHPHSD 475


>U49956-8|AAA93436.1|  765|Caenorhabditis elegans Hypothetical
           protein M03A1.6a protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 587 IKRTSFQMAPLQCPVFRTDITTGLAPIFGVSQFNETYEAF 468
           +  T+  +   Q P+FRT+I  G+     VSQ N TY+ F
Sbjct: 363 LNSTAMDVMYYQSPLFRTEIVRGV-----VSQLNRTYKLF 397


>U49956-7|AAL32232.1|  753|Caenorhabditis elegans Hypothetical
           protein M03A1.6b protein.
          Length = 753

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 587 IKRTSFQMAPLQCPVFRTDITTGLAPIFGVSQFNETYEAF 468
           +  T+  +   Q P+FRT+I  G+     VSQ N TY+ F
Sbjct: 351 LNSTAMDVMYYQSPLFRTEIVRGV-----VSQLNRTYKLF 385


>U49956-6|ABD94087.1|  762|Caenorhabditis elegans Hypothetical
           protein M03A1.6d protein.
          Length = 762

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 587 IKRTSFQMAPLQCPVFRTDITTGLAPIFGVSQFNETYEAF 468
           +  T+  +   Q P+FRT+I  G+     VSQ N TY+ F
Sbjct: 360 LNSTAMDVMYYQSPLFRTEIVRGV-----VSQLNRTYKLF 394


>U49956-5|ABD94086.1|  762|Caenorhabditis elegans Hypothetical
           protein M03A1.6c protein.
          Length = 762

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 587 IKRTSFQMAPLQCPVFRTDITTGLAPIFGVSQFNETYEAF 468
           +  T+  +   Q P+FRT+I  G+     VSQ N TY+ F
Sbjct: 360 LNSTAMDVMYYQSPLFRTEIVRGV-----VSQLNRTYKLF 394


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
           protein Y39B6A.18 protein.
          Length = 1352

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 130 VWYPSQWTISSPPPRPTLTHSGHVRVHHTG 219
           +++ SQ TIS PPP P  ++SG V    TG
Sbjct: 757 LFFASQQTISVPPPNPQ-SNSGGVNTGGTG 785


>AL132853-2|CAB60441.2|  424|Caenorhabditis elegans Hypothetical
           protein Y80D3A.4 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +1

Query: 295 LSRMEETPFFNVHNHPTLRKFSTNQIPVSLHQLCSSE---LATDSPLGTPAEIDTLSCSQ 465
           + ++   PFF VH  PTL +  T Q  +  H         L   SP  TP   D+L    
Sbjct: 123 IEKLVGRPFFVVHCKPTLIEIHTQQNLIDCHDFVEKGRRILFEGSP--TPWGSDSLQKLA 180

Query: 466 RKAS*VSLNWLTPKI 510
           R    ++ N+  PK+
Sbjct: 181 RGVRKLAGNYSNPKV 195


>AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine
           receptor, class x protein98 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -3

Query: 345 SGMIVHIEEGC--LFHPTQDSYGAIPK-ISRRDFQVVNLS 235
           S ++VH+ +GC  LF   +  +  IPK I +RDF  VN++
Sbjct: 301 SNLMVHVSDGCIMLFFNYEKKH-KIPKTIVKRDFTAVNVT 339


>AC024818-4|AAF60782.5|  457|Caenorhabditis elegans Hypothetical
           protein Y54H5A.4 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 454 RECLSPPVFLTASLSPALRNRADAEKQEFGLSRTSVEWDDC 332
           RE LSP     A++ P    + +A +++F +  T V   DC
Sbjct: 216 REGLSPCDVFHAAVMPCFDKKLEASREQFKVDGTDVRETDC 256


>Z77657-9|CAB01149.2|  381|Caenorhabditis elegans Hypothetical
           protein F08H9.5 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 588 YKENFVSNGTVTMSGFPNGYY 526
           Y   +  +GT+T  G+PN YY
Sbjct: 159 YGGQYTGSGTITSPGYPNQYY 179


>U23484-15|AAC46762.1|  299|Caenorhabditis elegans Hypothetical
           protein EEED8.2 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 277 YCTVRILSRMEETPFFNVHNHPTLRKFS 360
           Y   RI +++EE  FF++H +P  R  S
Sbjct: 124 YDIERIFAKLEEESFFSLHENPIQRTIS 151


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 28   AAHFHGNTSHLNTEVHEHYKG--NGL---IRVSHGAPHDVWYPSQWTISSPPPRPTLTHS 192
            A+H+HG TS +N +V  + +G   G+   +   HG   + +  SQW    PP     +HS
Sbjct: 1355 ASHYHGGTSGVNKQVASYAQGLPPGMGPPVVKPHG---NNYQASQWV--RPPTHRDSSHS 1409

Query: 193  GH 198
             H
Sbjct: 1410 YH 1411


>AF025457-8|AAB70968.2|  383|Caenorhabditis elegans Hypothetical
           protein C08E3.9 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 322 FNVHNHPTLRKFSTNQIPVSLHQLCSSELATDSPLGTPAEI 444
           F+  NH      S NQ+P SL ++  SE    S +GT  +I
Sbjct: 54  FSNGNHDLDYDRSVNQVPKSLPEMPKSEKTEISEIGTQVDI 94


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
            pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 28   AAHFHGNTSHLNTEVHEHYKG--NGL---IRVSHGAPHDVWYPSQWTISSPPPRPTLTHS 192
            A+H+HG TS +N +V  + +G   G+   +   HG   + +  SQW    PP     +HS
Sbjct: 1355 ASHYHGGTSGVNKQVASYAQGLPPGMGPPVVKPHG---NNYQASQWV--RPPTHRDSSHS 1409

Query: 193  GH 198
             H
Sbjct: 1410 YH 1411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,816
Number of Sequences: 27780
Number of extensions: 297481
Number of successful extensions: 884
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)