Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0393
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 307 EETPFFNVHNHPTLRKFSTNQIPVS 381
           E+T   + +N PT+ K S  + P S
Sbjct: 865 EQTSISHENNQPTMNKCSDRKRPAS 889


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 306 GRDTLLQCAQSSHST 350
           G   LLQCA S++ST
Sbjct: 764 GSQGLLQCATSNYST 778


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 163 ATISSTAKDXXXXXXXRETLLSSHYLCNAHELRCSDAMCFH 41
           AT ++TA         +ETL   H+L N H    S A+  H
Sbjct: 119 ATAAATATTTATGLIKQETLQRHHHLQNHHHHLQSTAVQDH 159


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 297 ESDGRDTLLQCAQSSHSTEVLDKPN 371
           E D R   +QC QSS   E+   P+
Sbjct: 47  EQDFRFEAIQCLQSSAFKEIKTLPD 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,818
Number of Sequences: 438
Number of extensions: 3675
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)