Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0393
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34680.1 68415.m04260 leucine-rich repeat family protein cont...    31   0.81 
At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family pr...    30   1.4  
At5g22140.2 68418.m02577 pyridine nucleotide-disulphide oxidored...    28   4.3  
At5g22140.1 68418.m02578 pyridine nucleotide-disulphide oxidored...    28   4.3  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    28   5.7  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    27   7.5  
At1g22335.1 68414.m02794 expressed protein ; expression supporte...    27   10.0 

>At2g34680.1 68415.m04260 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; identical to cDNA hypothetical protein
           (AIR9) mRNA, partial cds GI:3695020
          Length = 1661

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 25/95 (26%), Positives = 44/95 (46%)
 Frame = +3

Query: 267 ISWVLHRTNPESDGRDTLLQCAQSSHSTEVLDKPNSCFSASALFLRAGDRLAVRNTGGDR 446
           +S    RT+P       L + + SS S + + KP+   S  ++ +  G R   ++TG   
Sbjct: 102 VSTTASRTDPVRRSLPELRKSSVSSLSAKTVSKPSLSESKKSVPVSPGSRSLTKSTG--- 158

Query: 447 HSLMQPEKSFIGLIKLADAEDRRKTCSNIRSENRT 551
            SL +PE S    + ++ +  R  + S   S +RT
Sbjct: 159 FSLSKPESSARPAMSVSVSSKRAPSSSVDSSGSRT 193


>At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 399

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
 Frame = +3

Query: 261 DVISWVLHRTNPESDGRDTLLQCAQSSHSTEVLDKPNSCFSASALFLRAGDRLAVRNTGG 440
           +++ W  HR++  +   D L+ C+   H  E   KP    S      R G     R  GG
Sbjct: 89  ELVPWFHHRSSRAAMAMDALVPCSNLVH--EQQSKPGGVGST-----RVGSCSDGRTMGG 141

Query: 441 DRHSLMQPEKSFIGLIKLA-DAEDRRKTCSNIRSENRTL 554
            + + + PE S  G  +L  D  D   T +++ S + T+
Sbjct: 142 GKRARVAPEWSGGGSQRLTMDTYDVGFTSTSMGSHDNTI 180


>At5g22140.2 68418.m02577 pyridine nucleotide-disulphide
           oxidoreductase family protein contains Pfam profile
           PF00070 Pyridine nucleotide-disulphide oxidoreductase
           domain
          Length = 311

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 52  SHLNTEVHEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTHSG 195
           SH  +E +E  K +G + +  G P  V   ++  +  P  + TL H G
Sbjct: 68  SHYQSE-YEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKG 114


>At5g22140.1 68418.m02578 pyridine nucleotide-disulphide
           oxidoreductase family protein contains Pfam profile
           PF00070 Pyridine nucleotide-disulphide oxidoreductase
           domain
          Length = 365

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 52  SHLNTEVHEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTHSG 195
           SH  +E +E  K +G + +  G P  V   ++  +  P  + TL H G
Sbjct: 122 SHYQSE-YEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKG 168


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 112 HGAPHDVWYPSQWTISSPPPRPTLTHSGHVRV 207
           + +PH    PS  + SS PP P  + +G + +
Sbjct: 321 YSSPHSAPAPSSTSFSSAPPPPPYSSNGRINI 352


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 322 FNVHNHPTLRKFSTNQIPVSLHQLCSSELATDSPL 426
           F VH+  +L++FS  ++   LH++  S +  D+PL
Sbjct: 265 FRVHSQ-SLKRFSLKRVSSFLHEVALSGVVIDAPL 298


>At1g22335.1 68414.m02794 expressed protein ; expression supported
           by MPSS
          Length = 139

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 154 ISSPPPRPTLTHSGHVRVHH 213
           + +P PRP L H  H + HH
Sbjct: 41  LQAPSPRPYLHHQQHYQYHH 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,424,907
Number of Sequences: 28952
Number of extensions: 277511
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)