Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0392
         (622 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22TV2 Cluster: Putative uncharacterized protein; n=1; ...    36   1.0  
UniRef50_Q7NBL9 Cluster: Putative uncharacterized protein; n=3; ...    33   4.2  
UniRef50_Q40K45 Cluster: Sensor protein; n=18; Rickettsiales|Rep...    33   7.3  
UniRef50_Q7T9T5 Cluster: Lef-4; n=1; Adoxophyes orana granulovir...    32   9.6  

>UniRef50_Q22TV2 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2843

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 203  VIFRYVYFNNNFVRNLALYNNIFNRSVVKLFFHYSLL 313
            +IF Y YF  N + NL L NN F  S    FF  ++L
Sbjct: 1749 MIFSYNYFQKNVINNLVLVNNQFLSSQYSFFFQQNIL 1785


>UniRef50_Q7NBL9 Cluster: Putative uncharacterized protein; n=3;
           Mycoplasma|Rep: Putative uncharacterized protein -
           Mycoplasma gallisepticum
          Length = 1579

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = -2

Query: 291 NLTTDRLNILLYRARFLTKLLLKYTYRNITSKFNFIFQTQYLHIYKLTTANVFANKITGY 112
           N  TD+ N   ++   L KLLLK T  N       IF      I +L  A  F N +TG 
Sbjct: 542 NNDTDKFNYFYFQPNNLVKLLLKLTKNNQVVYLPLIFNNFNYDINQLEDA-FFVNLVTGN 600

Query: 111 Y 109
           Y
Sbjct: 601 Y 601


>UniRef50_Q40K45 Cluster: Sensor protein; n=18; Rickettsiales|Rep:
           Sensor protein - Ehrlichia chaffeensis str. Sapulpa
          Length = 828

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 221 YFNNNFVRNLALYNNIFNRSVVKLFFH 301
           YF NN V+N++L   ++N S VK+ F+
Sbjct: 378 YFQNNIVKNMSLEAQLYNNSYVKIHFN 404


>UniRef50_Q7T9T5 Cluster: Lef-4; n=1; Adoxophyes orana
           granulovirus|Rep: Lef-4 - Adoxophyes orana granulovirus
           (AoGV)
          Length = 452

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = -3

Query: 563 FKHNL*INNRPA-YLTNKIITIQTKY*WFKIYYLS 462
           F  +L +NN P+ YL NKIIT+Q +Y   K +Y++
Sbjct: 274 FCGDLILNNAPSLYLNNKIITVQVEYVEQKCFYIT 308


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,875,670
Number of Sequences: 1657284
Number of extensions: 8691705
Number of successful extensions: 18863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18852
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)