Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0392
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    28   6.2  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    28   6.2  

>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 260 YIEPDSLQNYC*NIHTEISLRNSISSFKRNIYTFINLQQLTYL-LIKLRAITLFIHVRTQ 84
           +++P+    Y  N +  + L+NS +     +   +N+ Q  Y+   +   + L +H + Q
Sbjct: 439 HVDPEYGNCYTFNFNDSVELKNSRAGPMYGLRLLLNVHQSDYMPTTEAAGVRLVVHEQDQ 498

Query: 83  LPF 75
            PF
Sbjct: 499 EPF 501


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 260 YIEPDSLQNYC*NIHTEISLRNSISSFKRNIYTFINLQQLTYL-LIKLRAITLFIHVRTQ 84
           +++P+    Y  N +  + L+NS +     +   +N+ Q  Y+   +   + L +H + Q
Sbjct: 439 HVDPEYGNCYTFNFNDSVELKNSRAGPMYGLRLLLNVHQSDYMPTTEAAGVRLVVHEQDQ 498

Query: 83  LPF 75
            PF
Sbjct: 499 EPF 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,371,306
Number of Sequences: 27780
Number of extensions: 228230
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)