Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0392
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    28   0.064
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    26   0.26 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   3.2  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   3.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.7  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 0.064
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 209 FRYVYFNNNFVRNLALYNNIFNRSVVKLFFH 301
           ++Y Y NNN+  N   YNN +N +  KL+++
Sbjct: 329 YKYNYNNNNYNNNN--YNNNYNNNCKKLYYN 357


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 215 YVYFNNNFVRNLALYNNIFNRSVVKLFFHYSLL 313
           Y  +NNN+  N   YNN +N +  KL+++ + +
Sbjct: 327 YNNYNNNY-NNYNNYNNNYNNNYKKLYYNINYI 358


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 221 YFNNNFVRNLALYNNIFNRSVVKLFFH 301
           Y NNN+  N   YNN    +  KL+++
Sbjct: 329 YNNNNYNNNYNNYNNNNYNNYKKLYYN 355


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +2

Query: 227 NNNFVRNLALYNNIFNRSVVKLFFHYSLL 313
           +NN++ N++ YNN  N +  KL+++ + +
Sbjct: 86  SNNYISNISNYNNNNNYN-KKLYYNINYI 113


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +2

Query: 227 NNNFVRNLALYNNIFNRSVVKLFFHYSLL 313
           +NN++ N++ YNN  N +  KL+++ + +
Sbjct: 86  SNNYISNISNYNNDNNYN-KKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +2

Query: 227 NNNFVRNLALYNNIFNRSVVKLFFHYSLL 313
           +NN++ N++ YNN  N +  KL+++ + +
Sbjct: 324 SNNYISNISNYNNNNNYN-KKLYYNINYI 351


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -3

Query: 311 KESNERIT*RLID*IYYYIEPDSLQNYC*NIHTEISLRNSISSFKRNIYTFINL 150
           ++SN     +LID    Y+ P  + N+    H ++ L +     K  + T ++L
Sbjct: 316 RDSNSSDFKKLIDNWMTYMPPSGIPNWVPGNHDQLRLVSRFGEEKARMITTMSL 369


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = -3

Query: 311 KESNERIT*RLID*IYYYIEPDSLQNYC*NIHTEISLRNSISSFKRNIYTFINL 150
           ++SN     +L+D    Y+ P  + N+    H ++ L +     K  + T ++L
Sbjct: 316 RDSNSSDFKKLVDNWMTYMPPSGIPNWVPGNHDQLRLVSRFGEEKARMITTMSL 369


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 587 RMCYHHSKFKHNL*INNRPA 528
           +M Y H +  H L IN+ P+
Sbjct: 801 QMIYGHQQSHHGLHINSSPS 820


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 294 NNLTTDRLNILLYRARFLTKLLLKYTYRNITSKFNFIF 181
           +N T     ++L  A     L +KY     T  FNF+F
Sbjct: 279 SNRTNSDPRMILTEAYTEFNLTIKYYKSGSTVPFNFMF 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,110
Number of Sequences: 438
Number of extensions: 3008
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)