Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0391
         (605 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0J8M9 Cluster: Os08g0103400 protein; n=3; Oryza sativa...    33   4.0  
UniRef50_Q4U8Y2 Cluster: Putative uncharacterized protein; n=2; ...    33   6.9  
UniRef50_Q4YAY8 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  
UniRef50_Q23FY9 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_Q0J8M9 Cluster: Os08g0103400 protein; n=3; Oryza
           sativa|Rep: Os08g0103400 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 318

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +2

Query: 332 FSNNSLSICLYFVCTCTIHIK------HHWLLRLNMSSPFDVVIIDFHCICMYLI 478
           F +++  +C+Y    C +HIK      HH +++    SP  V I+ +  IC + +
Sbjct: 88  FVSSAAILCIYIFSMCALHIKLLMNRDHHSVIKAIKESPASVAIMAYCFICFWFV 142


>UniRef50_Q4U8Y2 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria annulata
          Length = 1093

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = -1

Query: 293 FVFFLCNILKVSR*LHKVLVCLVYR*VTN*LKRYEEVGFDSTAYTFLFLRIRKDPTL 123
           F+F   N LKVSR +HK +  LVY       K  ++  FD+  Y   +  + KDP L
Sbjct: 684 FIFIEFNCLKVSRVIHKTVNELVY-------KNNQKWHFDTKFYNTSYTEMLKDPNL 733


>UniRef50_Q4YAY8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 894

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 79  SMAIKIRKE--NNRILFSVGSFLILRNKNVYAVESKPTSSYLFS*FVTYLYTRHTKTLWS 252
           ++ +K  KE  NN+I+   G   I  N N+    S   S+YLF     Y+Y +  K  + 
Sbjct: 17  NLILKSYKEIVNNKII-KEGKIYIFNNLNIPIFVSPDKSNYLFYINKKYIYFKENKYFYF 75

Query: 253 YRETFKMLQRK 285
           Y   F ++ +K
Sbjct: 76  YFPKFILISKK 86


>UniRef50_Q23FY9 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1331

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +1

Query: 220 LYTRHTKTLWSYRETFKMLQRKKTN**QRKIAFCVNIFFQ*FTIDLFVLCLYLHDTH*TS 399
           LY     T++S R+TFK+L +K     +R   F VN+  +     +     YL  +H   
Sbjct: 272 LYLNTFSTVYSKRQTFKLLNQKLAEISERDAMFAVNVQIRQIFTQIGKKYYYLEISHINH 331

Query: 400 LVVTTE---YEQSLRCCYNRFSLY 462
           L    E   Y   LR C +++  Y
Sbjct: 332 LRDYDEKRNYLNKLRECLDQYEEY 355


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,211,071
Number of Sequences: 1657284
Number of extensions: 11327247
Number of successful extensions: 23481
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23477
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)