Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0391
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    27   1.6  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    27   2.8  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.9  
SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase |Schizos...    25   6.5  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   6.5  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   8.6  

>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 376 LHDTH*TSLVVTTEYEQSLRCCYNRFSLYMYVFD 477
           +H+T    L V + YEQS  CC N  S ++   D
Sbjct: 259 IHETGNNELPVASAYEQSKACC-NELSTFLSQID 291


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 560 CSHIYHFHLLC*WFNS 513
           C+H +HFH +  W N+
Sbjct: 74  CNHAFHFHCISRWLNT 89


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 596 SNF--NDQYLRGKNCSHIYHFHLLC*WFNS 513
           SNF  ND+  R K C+H +H   +  W  S
Sbjct: 530 SNFELNDECRRLKQCNHFFHRECIDQWLTS 559


>SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 206

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 378 QVQTKYKQIDSELLEKYIYTKRN 310
           +V+ K  Q+D E+L+KY +T  N
Sbjct: 154 KVKPKNAQLDKEILDKYYFTGCN 176


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -3

Query: 375 VQTKYKQIDSELLEKYIYTKRNFSLLLICFFS----LQHFES 262
           V  K+ +++ ELLEK+  T++N  L L   F+    +QH ++
Sbjct: 485 VPEKFDKLEIELLEKFQQTQQNTHLALCDSFNTPLVMQHIDN 526


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -3

Query: 354 IDSELLEKYIYTKRNF 307
           + S +LE+Y+Y+K+N+
Sbjct: 290 VASSILERYVYSKKNY 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,977
Number of Sequences: 5004
Number of extensions: 53509
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)