Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0391
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18...    33   0.13 
01_01_0475 + 3500385-3500880,3501078-3501154,3501851-3502019,350...    29   3.8  
06_01_0278 - 2042574-2042612,2042738-2043055,2043150-2043296,204...    28   5.0  

>08_01_0025 -
           184899-185384,185707-185940,187156-187341,188108-188158
          Length = 318

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +2

Query: 332 FSNNSLSICLYFVCTCTIHIK------HHWLLRLNMSSPFDVVIIDFHCICMYLI 478
           F +++  +C+Y    C +HIK      HH +++    SP  V I+ +  IC + +
Sbjct: 88  FVSSAAILCIYIFSMCALHIKLLMNRDHHSVIKAIKESPASVAIMAYCFICFWFV 142


>01_01_0475 +
           3500385-3500880,3501078-3501154,3501851-3502019,
           3502385-3502473,3502601-3502765,3502841-3502918,
           3503087-3503190,3503317-3503422
          Length = 427

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 369 TKYKQIDSELLEKYIYTKRNFSLLLICFFSLQHFESFTIT 250
           + Y++ D + + +++     FSLLL+  F  QH + F +T
Sbjct: 131 SSYQRYDIQQVARWVEQILPFSLLLLVVFIRQHLQGFFVT 170


>06_01_0278 -
           2042574-2042612,2042738-2043055,2043150-2043296,
           2043382-2044221,2045182-2045282,2045666-2045791,
           2047124-2047214
          Length = 553

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 67  PHLSSMAIKIRKENNRILFSVGSFLILRNKNVYAVESKPTSSYLFS*FVTYLY 225
           P+L S+AIK RKE          FL LR+ ++  +   P   YL     +Y+Y
Sbjct: 374 PNLESLAIKSRKETAFAPKLCSKFLCLRHLSIGLIGFFPAYDYLS--LASYIY 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,510,653
Number of Sequences: 37544
Number of extensions: 264454
Number of successful extensions: 484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)