Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0391
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)                 33   0.24 
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              28   5.1  
SB_15463| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3)                    28   6.7  
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             27   8.9  

>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
          Length = 1427

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 85   AIKIRKENNRILFSVGSF-LILRNKNVYAVESKP 183
            AIK+R  NNR+L+    F L LR KN+Y    KP
Sbjct: 1293 AIKLRTGNNRVLYLQTYFHLFLRRKNIYLKFGKP 1326


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 326  IYFSNNSLSICLYFVCTCTIH-IKHHWLLRL--NMSSPFDVVIIDFHCICMYLI 478
            +Y    S+ ICLY V    I+ +    LL +    +S   V I   HC C+Y++
Sbjct: 1624 VYGYTLSVRICLYIVSAYNIYTLSVRTLLYIVSAFTSTLSVRITSIHCQCVYIV 1677


>SB_15463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 114 DFV*CRVFSNS*KQKCVCGRVKAHFFISFQLVCYLSIHKTHQNFVELS*NF 266
           D + CR  S S  Q  +C RVK   F  F++VC ++I + +   + ++  F
Sbjct: 238 DAIKCRGMSRSLSQT-ICERVKLLGFKQFKIVCTVTIGEMNNQGIRVASRF 287


>SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3)
          Length = 860

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 347 LSICLYFVCTCTIHIKHH--WLLRLNMSSPFDVVIIDFHCICMY 472
           L+  L  +  C + I HH  W L  N+       I DF+ +C Y
Sbjct: 207 LTAWLGSILFCVLQIAHHLQWRLTKNLYRDISTAIEDFNRLCEY 250


>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 353 ICLYFVCTCTIHIKHHWLLRLNMSSPFDVVIIDFHCICMYLITTFP 490
           ICLY +   TIH  H +   +++  P     I F  +  YLI  +P
Sbjct: 155 ICLYPISYRTIHFSHLFTYLIHL-YPISYRTIHFSPLITYLIRLYP 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,958,269
Number of Sequences: 59808
Number of extensions: 362798
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)