Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0391
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.4  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 200 KRYEEVGFDSTAYTFLFLRIRKDPTLNK 117
           +R EEV  D T  T   LR++K+  L +
Sbjct: 339 ERTEEVALDRTPVTQGLLRVKKEEELQE 366


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 254 IVKLSKCCKEKKQINNKEKLR 316
           ++K ++C K   Q NN+ K +
Sbjct: 411 LIKNTRCAKSNNQNNNQNKYK 431


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 375 VQTKYKQIDSELLEKYIYTKRNFSLLL 295
           V ++Y Q +S +   Y + KR+F   L
Sbjct: 625 VSSEYNQYNSRIWGGYKFDKRSFGFPL 651


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 375 VQTKYKQIDSELLEKYIYTKRNFSLLL 295
           V ++Y Q +S +   Y + KR+F   L
Sbjct: 625 VSSEYNQYNSRIWGGYKFDKRSFGFPL 651


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 406 VTTEYEQSLRCCYNRFSLYMY 468
           V  EY+Q++    N+ ++Y+Y
Sbjct: 489 VDHEYDQNVWVLSNKLAMYLY 509


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +3

Query: 168 GRVKAHFFISFQLVCYLSIHKTHQNFVELS*NFQNV 275
           GR K+       L C+ +I+KT          F N+
Sbjct: 245 GRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNI 280


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +3

Query: 168 GRVKAHFFISFQLVCYLSIHKTHQNFVELS*NFQNV 275
           GR K+       L C+ +I+KT          F N+
Sbjct: 245 GRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNI 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,052
Number of Sequences: 438
Number of extensions: 3619
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)