Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0391
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar...    29   3.2  
At1g70340.1 68414.m08092 expressed protein                             28   4.2  
At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 fam...    28   5.5  
At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c...    28   5.5  
At4g02980.1 68417.m00405 auxin-binding protein 1 (ABP1) identica...    27   9.6  

>At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar to
           diacylglycerol kinase, theta (diglyceride kinase, DGK-
           theta, DAG kinase theta). [Homo sapiens]
           SWISS-PROT:P52824
          Length = 712

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 329 YFSNNSLSICLYFVCTCTIHIKHHWLLR-LNMSSPFDVVIIDFHC 460
           Y S+++   C       + H++HHW  R +NM    D+    F+C
Sbjct: 124 YCSSSAAKDCKCVAQAGSDHVRHHWSERWVNMDDNADMTAFCFYC 168


>At1g70340.1 68414.m08092 expressed protein
          Length = 510

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 31  RLSCIVNNLNRYPHLSSMAIKIRKENNRILFS 126
           R SC V++ +++P   S+  +  K+NN  LFS
Sbjct: 206 RKSCFVSSASKFPRSRSVCDRQAKKNNASLFS 237


>At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 750

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 55  LNRYPHLSSMAIKIRKENNRILFSVGSFL 141
           LNR   ++ +  K++KE +RI FS G F+
Sbjct: 329 LNRSKGMNLLRPKVKKEKHRITFSTGFFV 357


>At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7)
           contains Pfam profiles: PF05033: Pre-SET motif, PF00856
           SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754
          Length = 693

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 324 YTKRNFSLLLICFFSLQHFESFTITPQSFGVSCV 223
           Y  R    LLI  F+++H    T     +GVSCV
Sbjct: 631 YENRGDVYLLIGLFAMKHIPPMTELTYDYGVSCV 664


>At4g02980.1 68417.m00405 auxin-binding protein 1 (ABP1) identical
           to Auxin-binding protein 1 precursor (ABP)
           (Swiss-Prot:P33487) [Arabidopsis thaliana]
          Length = 198

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 173 SQSPLLHIFSVSLLLIYTQDT 235
           S SP++ +FSV+LLL Y  +T
Sbjct: 10  SSSPIVVVFSVALLLFYFSET 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,596,577
Number of Sequences: 28952
Number of extensions: 247343
Number of successful extensions: 526
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)