Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0390
         (593 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CB37B Cluster: hypothetical protein TTHERM_0065...    33   3.8  
UniRef50_Q5CK91 Cluster: AlphaSNBP; n=2; Cryptosporidium|Rep: Al...    33   5.0  
UniRef50_Q18RW4 Cluster: Methyl-accepting chemotaxis sensory tra...    32   8.8  

>UniRef50_UPI00006CB37B Cluster: hypothetical protein TTHERM_00657630;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00657630 - Tetrahymena thermophila SB210
          Length = 1061

 Score = 33.5 bits (73), Expect = 3.8
 Identities = 13/51 (25%), Positives = 32/51 (62%)
 Frame = -1

Query: 314  NRKYDHGKTTIKGGNYKSVSYRNEYSK*VNFWNLTYSLVPETSLQMLKLKQ 162
            N+  + GKT  +  N+ S+S+R +YS  +   +++ + + ++++Q  K++Q
Sbjct: 993  NQNQNCGKTIPQQNNFNSISHRPQYSSNIANQDISVNFIQQSTIQFKKIQQ 1043


>UniRef50_Q5CK91 Cluster: AlphaSNBP; n=2; Cryptosporidium|Rep:
           AlphaSNBP - Cryptosporidium hominis
          Length = 377

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 344 NTKKGNLSISNRKYDHGKTTIKGGNYKSVSYR 249
           +T +G+ SISN + DH +   +GG Y   SY+
Sbjct: 149 STNQGSSSISNGRKDHSRNRQRGGGYSGKSYK 180


>UniRef50_Q18RW4 Cluster: Methyl-accepting chemotaxis sensory
           transducer; n=3; Peptococcaceae|Rep: Methyl-accepting
           chemotaxis sensory transducer - Desulfitobacterium
           hafniense (strain DCB-2)
          Length = 334

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 389 LPLTHSCNQIICNLLILSNAKFAVKFAMDKSYEKL-KLELNLFERYAYRMKWA 544
           L  T    QI+ N+ I +N   AV+ A D +Y+ + K++ NLFER      WA
Sbjct: 74  LASTKESTQIVENIQIKANEVMAVRTA-DVAYDTIDKIDRNLFERNCDAQAWA 125


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,452,247
Number of Sequences: 1657284
Number of extensions: 10328268
Number of successful extensions: 22376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22373
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)