Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0390
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    26   3.6  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   3.6  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   4.8  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   6.3  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.3  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   8.3  

>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 204 TCTRNISTNVKVKTTKCSLPFCYIKAFSFN 115
           TC+    + +K K  KCS P+C +  +  +
Sbjct: 3   TCSICNESEIKYKCPKCSFPYCSLPCWKIH 32


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +1

Query: 127 CLYVAKRQATFC--CFNFNICRD 189
           CL + +  +  C  CF+F++CRD
Sbjct: 65  CLKIIRNDSFHCTKCFDFDVCRD 87


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 410 NQIICNLLILSNAKFAVKFAMDKSYEKLKLELNLFERYA 526
           +++   L +L+N+K  +K      Y+K+K E+ + +  A
Sbjct: 55  SEVFEGLNVLNNSKCIIKVLKPVKYKKIKREIKILQNLA 93


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 74  HPLTSQSHHPPFPVLKENAF 133
           HP T   HHPP P    N +
Sbjct: 170 HPHTRPPHHPPHPHFHNNNY 189


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 349 TCSLCFRKGVVSYSTPNT 402
           +C LC  KGV S STP++
Sbjct: 563 SCPLCRTKGVASASTPSS 580


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 204 TCTRNISTNVKVKTTKCSLPFCYIKAFSFN 115
           T +R+IS +++ ++   SLP    K++S+N
Sbjct: 148 TLSRSISLHLRSESAPISLPIHLYKSYSYN 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,815
Number of Sequences: 5004
Number of extensions: 49127
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)