Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0390
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0113 + 20938357-20938730,20938820-20939057,20939140-209392...    28   4.9  
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530...    27   8.5  

>09_06_0113 +
           20938357-20938730,20938820-20939057,20939140-20939264,
           20939682-20939715,20939804-20939850,20939948-20940079,
           20940420-20940484,20940613-20940685,20940790-20940946
          Length = 414

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 335 KGNLSISNRKYDHGKTTIKGGNYKSVS 255
           K + S S++KY  G+  +KGGN+K  S
Sbjct: 253 KFHSSKSSQKYSTGRVELKGGNFKFAS 279


>01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,
            5309110-5309356,5309694-5309839,5312482-5312707,
            5313652-5313874,5314054-5314202,5315345-5315514,
            5316064-5316135,5317610-5317741,5317813-5317900,
            5319440-5319656,5320123-5320306,5320644-5320727,
            5321148-5321242,5321519-5321562,5321707-5322367,
            5323053-5323356
          Length = 1218

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 362  VSGRVLLVILPLTHSCNQIICNLLILSNAKFAVKF 466
            V+GR L     + +  N ++C+L +L N +F  K+
Sbjct: 1182 VAGRALCHFYTVKNEGNAVVCSLQLLRNFRFTKKY 1216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,927,507
Number of Sequences: 37544
Number of extensions: 266253
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)