Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0390
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)          31   0.70 
SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)                27   8.6  
SB_28289| Best HMM Match : Adeno_E4_34 (HMM E-Value=4.5)               27   8.6  
SB_27870| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   8.6  

>SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)
          Length = 846

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 374 VLLVILPLTHSCNQIICNLLILSNAKFAVKFAMDKSYEKL 493
           V+ +I P TH+C  I CNLL +  +   V F    S +++
Sbjct: 60  VIAIIGPTTHACAMIACNLLDVQQSPALVGFIRQYSIDQV 99


>SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)
          Length = 917

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 348 LKYQERQFKHIKPKI*PWQNYDKR 277
           +KY ER  KHI+P+  P + YD++
Sbjct: 675 VKYTERLHKHIRPENGPNEIYDRK 698


>SB_28289| Best HMM Match : Adeno_E4_34 (HMM E-Value=4.5)
          Length = 339

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 395 LTHSCNQIICNLLILSNAKFAVKFAMDKSYEKLKLELNLFERYAYRMKWAVN 550
           LTH+ N  +  +LIL ++ + +  A++ +     L++ +     YR+  AVN
Sbjct: 96  LTHAVNNTLLQMLILRHSMYRLSHAVNNTL----LQMLILRHSIYRLSHAVN 143


>SB_27870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 395 LTHSCNQIICNLLILSNAKFAVKFAMDKSYEKLKLELNLFERYAYRMKWAVN 550
           LTH+ N  +  +LIL ++ + +  A++ +     L++ +     YR+  AVN
Sbjct: 96  LTHAVNNTLLQMLILRHSMYRLSHAVNNTL----LQMLILRHSIYRLSHAVN 143


>SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 349

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 248 SCRIPTYSCLLLS*FCHGHIFGLICLNCLSWYLRLAAYVSGRVLLVILPLTHS-CNQIIC 424
           +C  P +  + +  FCH  ++        SW  + A    G V + +LPL +S  N II 
Sbjct: 273 ACWAPFFIIMFIVQFCHDCVYN-------SWLTKEAQMTIGTVFVYVLPLLNSAANPIIY 325

Query: 425 NLLILSNAKFAVKF 466
           +     NA F + F
Sbjct: 326 SKF---NADFRLAF 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,735,927
Number of Sequences: 59808
Number of extensions: 335346
Number of successful extensions: 607
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)