Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0390
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.2  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   6.9  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   6.9  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   6.9  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   6.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.1  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 386 ILPLTHSCNQIICNLLILSNAKFAVKFAMDKSYEKLKLELNLFERY 523
           +L LT+  N+++   L    +K    F   +S EKL   +   E Y
Sbjct: 73  VLVLTNPSNEVVAVALGALLSKGEESFPTARSLEKLLCNVEAEENY 118


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 272 NYKSVSYRNEYSK*VNFWNLTY 207
           NY + +Y N   K + ++N+ Y
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINY 117


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 272 NYKSVSYRNEYSK*VNFWNLTY 207
           NY + +Y N   K + ++N+ Y
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINY 117


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 272 NYKSVSYRNEYSK*VNFWNLTY 207
           NY + +Y N   K + ++N+ Y
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINY 117


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 272 NYKSVSYRNEYSK*VNFWNLTY 207
           NY + +Y N   K + ++N+ Y
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINY 117


>AF388659-2|AAK71994.1|  463|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform B
          protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 36 SKAINHFQEKKSNI 77
          S++IN  QEKK+N+
Sbjct: 2  SRSINMDQEKKNNV 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,505
Number of Sequences: 438
Number of extensions: 3886
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)